Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 11,952,149 – 11,952,269 |
Length | 120 |
Max. P | 0.626531 |
Location | 11,952,149 – 11,952,269 |
---|---|
Length | 120 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 80.00 |
Mean single sequence MFE | -41.44 |
Consensus MFE | -22.82 |
Energy contribution | -23.94 |
Covariance contribution | 1.12 |
Combinations/Pair | 1.36 |
Mean z-score | -1.96 |
Structure conservation index | 0.55 |
SVM decision value | 0.19 |
SVM RNA-class probability | 0.626531 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 11952149 120 + 23771897 UCAGCAACUGGUCAGUGCUCCACUACCGUAGAGUGCUCCGCCAAAAACUGCGCAACCGCCAGUGAUGGCACCACCUACCCUGUCGCUGGAGAAACUGGCCAGUUCUACGUCUGCCUCAGC ..((.(((((((((((.((((((.((.((((.(((....((((...((((.((....))))))..))))..)))))))...)).).)))))..))))))))))))).............. ( -44.20) >DroSec_CAF1 5009 120 + 1 UCAGCAACUGGUCAGUGCUCCACGACCGUGGAGUGCUCAGCCAAAAACUGUGCAACCGCCAGUGAGGACACCACUUUCCCUGUCGCCGGAGAAAGUGGCCAAUUCUACGUCUGCCUCAAC ........((((.((..((((((....))))))..))..))))...((((.((....))))))((((.((((((((((.(((....))).)))))))).............))))))... ( -43.81) >DroSim_CAF1 4977 120 + 1 UCAGCAACUGGUCAGUGCUCCACGACCGUGGAGUGCUCAGCCAAAAACUGUGCAACCGCCAGUGAGGGCACCACCUACCCCGUCGCCGGAGAAAGUGGCCAAUUCUACGUCUGCCUCAAC ...(((.(((((.((..((((((....))))))..))..(((....((((.((....))))))...)))...............))))).....((((......))))...)))...... ( -38.80) >DroEre_CAF1 5443 120 + 1 UCAGCAACCGGCCAGUGCUCCACUACCGUGGAGUGCUCCGCCAAAAAGUGCGCCACCGCCAGUGAUGGAACCACCUACCCAGUCGCCGGAGAAGAUGGCCAGUUUUACGUCUGCCUUGAC ((((((..((((.((..((((((....))))))..))..))).((((.((.((((.(.((.(((((((..........))).)))).))....).)))))).))))..)..)))..))). ( -42.40) >DroYak_CAF1 3151 120 + 1 UCAGCCACUGGUCAGUGCUCCACUACUGUGGAGUGCUCUGCCAAAAAUUGCGCCACCGCCAGUGAUGGCACCACCUACGCUAUUGCCGGAGAAACUGGCCAAUUUUACGUCUGCCUAAAC .(((.(..((((.((..((((((....))))))..))..))))(((((((.((((...((.(..(((((.........)))))..).))......)))))))))))..).)))....... ( -43.40) >DroAna_CAF1 4911 120 + 1 GCUGAGACCGCCCAGUGCUCAUCCACAGUGCAAUGUUCUGCUGAGCUAUGCGCUAGCGCUGCUGAUGGUACCACAUAUCCCGUGGAAGGUGACACCAGCAAGUUCUAUGUCUGCAACAAC ((..((((....(((((((.......((((((..((((....))))..))))))))))))).((.((((.((((.......))))..(....))))).))........))))))...... ( -36.01) >consensus UCAGCAACUGGUCAGUGCUCCACUACCGUGGAGUGCUCAGCCAAAAACUGCGCAACCGCCAGUGAUGGCACCACCUACCCUGUCGCCGGAGAAACUGGCCAAUUCUACGUCUGCCUCAAC .......(((((.((((((((((....))))))))))..((((...((((.((....))))))..))))...............))))).......(((.............)))..... (-22.82 = -23.94 + 1.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:14:23 2006