Locus 4095

Sequence ID 3L_DroMel_CAF1
Location 11,949,042 – 11,949,159
Length 117
Max. P 0.949516
window6370

overview

Window 0

Location 11,949,042 – 11,949,159
Length 117
Sequences 5
Columns 117
Reading direction reverse
Mean pairwise identity 92.05
Mean single sequence MFE -44.34
Consensus MFE -41.70
Energy contribution -40.90
Covariance contribution -0.80
Combinations/Pair 1.15
Mean z-score -1.45
Structure conservation index 0.94
SVM decision value 1.39
SVM RNA-class probability 0.949516
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 11949042 117 - 23771897
UCAGUUGGUACUACUGUGGGCUUAGCAGUGGGCUUCCAUGGUUCAUCGGUCGAAUCGGAUGGGUCCUCCGAUGAGUCAUCUGUGGGAUCCCAGGGAUCAUCAGUGGGGUCGUCAGGA
.....(((..(((((((.......)))))))....)))((..(((((((..((..(....)..))..)))))))..))((((.(.(((((((..(.....)..))))))).))))). ( -43.00)
>DroSec_CAF1 1921 117 - 1
UCAGUUGGUACUACUGUGGGCUUAGCAGUGGGCUUCCAUGGUUCAUCGGUCGAAUCGGAAGCAUCCUCCGAUGAGUCAUCUGUGGGGUCCCAGGGAUCAUCAGUGGGAUCGUCAGGA
.....(((..(((((((.......)))))))....)))((..(((((((..((..(....)..))..)))))))..))((((.(.(((((((..(.....)..))))))).))))). ( -44.50)
>DroSim_CAF1 1927 117 - 1
UCAGUUGGUGCUACUGUGGGCUUAACAGUGGGCUUCCAUGGUUCAUCGGUCGAAUCGGAUGGAUCCUCCGAUGAGUCAUCUGUGGGAUCCCAGGGAUCAUCAGUGGGAUCGUCAGGA
...(..(((.(((((((.......))))))))))..).((..(((((((..((.((.....))))..)))))))..))((((.(.(((((((..(.....)..))))))).))))). ( -43.70)
>DroEre_CAF1 1996 117 - 1
UCAGUAGGUGCUACUGUGGGCCUAGCAGUGGGACUCCAUGGUUCAUCGGUUGAAUCCGAUGGGUCCUCCGAUGAGUCAUCUGUGGGAUCCCAGGGCUCAUCCGUGGGAUCAUCAGGA
......(((.(((((((.......))))))).)))...((..(((((((..((.(((...)))))..)))))))..))((((...(((((((.((.....)).)))))))..)))). ( -48.90)
>DroYak_CAF1 93 117 - 1
AGAGUUGGUACUACUGUGGGCUUAGCAGUGGGGCUCCAUGGUUUGUCGGUUGAAUCCGAUGGGUCCUCCGAUGAGUCAUCUGUGGGAUCCCAGGGAUCAUCAGUGGGAUCGUCAGGA
...(.((((.((((((((((((((...(..((((((........(((((......)))))))))))..)..))))))((((.(((....))).)))))).)))))).)))).).... ( -41.60)
>consensus
UCAGUUGGUACUACUGUGGGCUUAGCAGUGGGCUUCCAUGGUUCAUCGGUCGAAUCGGAUGGGUCCUCCGAUGAGUCAUCUGUGGGAUCCCAGGGAUCAUCAGUGGGAUCGUCAGGA
......((..(((((((.......)))))))....)).((..(((((((..((..(....)..))..)))))))..))((((...(((((((..(.....)..)))))))..)))). (-41.70 = -40.90 +  -0.80)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:14:20 2006