| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 11,948,438 – 11,948,528 |
| Length | 90 |
| Max. P | 0.601401 |
| Location | 11,948,438 – 11,948,528 |
|---|---|
| Length | 90 |
| Sequences | 4 |
| Columns | 90 |
| Reading direction | reverse |
| Mean pairwise identity | 85.58 |
| Mean single sequence MFE | -15.44 |
| Consensus MFE | -10.50 |
| Energy contribution | -10.31 |
| Covariance contribution | -0.19 |
| Combinations/Pair | 1.06 |
| Mean z-score | -1.64 |
| Structure conservation index | 0.68 |
| SVM decision value | 0.14 |
| SVM RNA-class probability | 0.601401 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 11948438 90 - 23771897 ACUUCCGGUUAUCUAGAACAAGUAAUUGACUUUUCAAUUAUUCGUGAUAAGAUAAUGUUGAGGCAAAAAAAAAAAAAAUGUAACCAAGAU .((((..((((((((..((.(((((((((....))))))))).))..).)))))))...))))........................... ( -15.60) >DroSec_CAF1 1341 82 - 1 ACUUCCGGUUAUCAGGAACCAGUAAUUGACUUUUCAAUUAUUCGCGAUAAGAUAAUG--GAGGCAAAAAAA------AAGUAACCAAGAU .((((((.(((((.(....)(((((((((....)))))))))........)))))))--))))........------............. ( -15.70) >DroSim_CAF1 1347 80 - 1 ACUUCCGGUUAUCAAGAACAAGUAAUUGACUUUUCAAUUAUUCGCGAUAAGAUAAUG--GAGGCAAAA--A------AAGUAACCAAGAU .((((((.(((((.......(((((((((....)))))))))........)))))))--)))).....--.------............. ( -15.16) >DroEre_CAF1 1421 83 - 1 ACUUACGGUUAUCAAGAUCUAGUAAUUGACUUUUCAAUUAUUCGCGAUAAGAUAAUGUUAAGGCAAAAAG-------CAGUUACAGAGAU .((((..((((((...(((.(((((((((....)))))))))...)))..))))))..))))((.....)-------)............ ( -15.30) >consensus ACUUCCGGUUAUCAAGAACAAGUAAUUGACUUUUCAAUUAUUCGCGAUAAGAUAAUG__GAGGCAAAAAAA______AAGUAACCAAGAU .(((...((((((.......(((((((((....)))))))))........))))))...)))............................ (-10.50 = -10.31 + -0.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:14:19 2006