| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 11,922,865 – 11,922,985 |
| Length | 120 |
| Max. P | 0.725594 |
| Location | 11,922,865 – 11,922,985 |
|---|---|
| Length | 120 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 75.39 |
| Mean single sequence MFE | -47.37 |
| Consensus MFE | -27.19 |
| Energy contribution | -26.45 |
| Covariance contribution | -0.74 |
| Combinations/Pair | 1.46 |
| Mean z-score | -1.60 |
| Structure conservation index | 0.57 |
| SVM decision value | 0.41 |
| SVM RNA-class probability | 0.725594 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 11922865 120 - 23771897 ACGGCCAUUACUCUCGCAGGCGAUUCCCGAAGGUCCUGCAUUGGGACCAGAGGGUGGGGUAUACUCCCACGGGCAAACAUAGUCCUGGGGGUAUUCACAUUCUUCGGUAUUUGGGUUGUA ((((((.......(((....)))...(((((((((((.....))))))...(((((.((.(((((((((.((((.......))))))))))))))).))))))))))......)))))). ( -48.60) >DroVir_CAF1 27477 120 - 1 UCGACCGUUGCUCUCACAGGAUAUGCCGGAGGGUCCGGCAUUCGGACCAGAGGGUGGGGUGUGCUCCCAGGGACACUCCACAUUCUGUGGAUAAUCACAGAGUUCAGCCUUCGAGUCGUA .((((((..(((.......((.(((((((.....)))))))))((((......(((((((((.((....)).)))))))))..((((((......)))))))))))))...)).)))).. ( -49.80) >DroGri_CAF1 27076 120 - 1 GCGACCGUUGCUCUCACAGGAGAUGCCGGAGGGCCCGGCGUUCGGACCGGAUGGUGGUGAAUGCUCCCAGGGGCAAUCCACAUUUUGGGGAUAAUCACAUAACUCAUAACUGGAAUCGUA (((((((..((((((....)))).(((((.....))))))).))).(((((((((.((((.(((((....)))))((((.(.....).))))..))))...)).)))..))))..)))). ( -42.40) >DroSim_CAF1 5232 120 - 1 ACGGCCAUUACUCUCGCAGGCGAUGCCCGAAGGUCCUGCAUUGGGACCAGAGGGCGGGGUAUACUCCCACGGGCAAUCAUAGUCCUGUGGGUAUUCGCAUUCUUCGGUAUUUGGGUCGUA ((((((..((((.......(((((((((...((((((.....))))))...))))).........(((((((((.......).))))))))...)))).......))))....)))))). ( -50.34) >DroYak_CAF1 5338 120 - 1 ACGGCCAUUACUCUCGCAGGCGAUUCCCGAAGGUCCUGCGUUGGGACCAGAGGGCGGGGUAUACUCCCACGGGCAAUCGUAGUCCUGUGGAUAUUCGCAUUCUUCGGUAUUGGGGUUGUA ((((((.....((.(((((((((((((((..((((((.....))))))...(((.((......))))).)))).)))))....))))))))......((..(....)...)).)))))). ( -45.30) >DroAna_CAF1 5098 120 - 1 GCGGCCAUUGCUUUCGCAGGCGGUGCCCGAAGGUCCUGCCGUUGGACCCGAGGGCGGAGUGUACUCCCACUUGCAUUCCACAUUUUGCGGGUAGUCGCAGAUGCCAAGAGAAGAGUCGUA ((((((..(((....)))((((((((((...(((((.......)))))...))))((((((((........))))))))))..(((((((....))))))))))).......).))))). ( -47.80) >consensus ACGGCCAUUACUCUCGCAGGCGAUGCCCGAAGGUCCUGCAUUGGGACCAGAGGGCGGGGUAUACUCCCACGGGCAAUCCAAAUCCUGUGGAUAUUCACAUACUUCAGUAUUGGAGUCGUA ((((((........((((((....((((...((((((.....))))))...))))((((....))))................))))))((............)).......).))))). (-27.19 = -26.45 + -0.74)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:14:17 2006