Locus 4090

Sequence ID 3L_DroMel_CAF1
Location 11,916,536 – 11,916,656
Length 120
Max. P 0.549108
window6364

overview

Window 4

Location 11,916,536 – 11,916,656
Length 120
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 95.50
Mean single sequence MFE -37.18
Consensus MFE -32.40
Energy contribution -33.16
Covariance contribution 0.76
Combinations/Pair 1.03
Mean z-score -1.24
Structure conservation index 0.87
SVM decision value 0.03
SVM RNA-class probability 0.549108
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 11916536 120 + 23771897
CUAAAUCCAGAUAUUUUCCUACGCGUUGGCAUAAGUCCGCCCAAGGGAUGCCUGCUCUACGGACCGCCUGGCACCGGAAAAACUCUCCUGGCCCGCGCCAUCGCCUCCCAGAUGGACGCC
......((((...((((((...(((..(((....)))))).....((.((((.((((....))..))..))))))))))))......))))...((((((((........))))).))). ( -36.80)
>DroSec_CAF1 92338 120 + 1
CUAAAUCCAGAUAUUUUCCUACGCGUGGGCAUAAGUCCGCCCAAGGGAUGUCUGCUCUACGGACCACCUGGCACCGGAAAAACUCUCCUGGCCCGCGCCAUCGCCUCCCAGAUGGACGCC
......((((...((((((...((.(((((........)))))(((...(((((.....)))))..))).))...))))))......))))...((((((((........))))).))). ( -39.10)
>DroSim_CAF1 92598 120 + 1
CUAAAUCCAGAUAUUUUCCUACGCGUGGGAAUAAGUCCGCCCAAGGGAUGUCUGCUCUACGGACCACCUGGCACCGGAAAAACUCUCCUGGCCCGCGCCAUCGCCUCCCAGAUGGACGCC
......((((.....((((((....))))))....((((.(((.((...(((((.....)))))..)))))...)))).........))))...((((((((........))))).))). ( -38.00)
>DroEre_CAF1 94788 120 + 1
CUGAAUCCAGAAAUAUUCCUACGCGUGGGCAUCAAUCCGCCCAAGGGAUGCCUGCUCUACGGACCACCUGGCACCGGAAAAACUCUCCUGGCCCGCGCCAUCGCCUCCCAGAUGGACGCC
......((((.....((((..(...(((((........))))).)((.((((((.((....)).))...))))))))))........))))...((((((((........))))).))). ( -37.72)
>DroYak_CAF1 96889 120 + 1
CUAAAUCCAGACAUAUUCCUACGCGUCGGCAUCAAUCCGCCUAAGGGAUGCCUGCUCUACGGACCACCUGGCACCGGAAAAACUCUCCUGGCCCGCGCCAUCGCCUCCCAGAUGGACGCC
.....(((.(((............)))((((((...((......))))))))........)))......(((.(.(((.......))).)))).((((((((........))))).))). ( -34.30)
>consensus
CUAAAUCCAGAUAUUUUCCUACGCGUGGGCAUAAGUCCGCCCAAGGGAUGCCUGCUCUACGGACCACCUGGCACCGGAAAAACUCUCCUGGCCCGCGCCAUCGCCUCCCAGAUGGACGCC
......((((...((((((...((((((((((...(((......)))))))))))....(((.....)))))...))))))......))))...((((((((........))))).))). (-32.40 = -33.16 +   0.76)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:14:14 2006