Locus 4088

Sequence ID 3L_DroMel_CAF1
Location 11,913,672 – 11,913,766
Length 94
Max. P 0.635107
window6361

overview

Window 1

Location 11,913,672 – 11,913,766
Length 94
Sequences 6
Columns 111
Reading direction reverse
Mean pairwise identity 87.56
Mean single sequence MFE -28.48
Consensus MFE -25.48
Energy contribution -24.98
Covariance contribution -0.50
Combinations/Pair 1.23
Mean z-score -1.41
Structure conservation index 0.89
SVM decision value 0.21
SVM RNA-class probability 0.635107
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 11913672 94 - 23771897
CACUCAG----CCCAUCCGAUGCUUGAUGGCCAUACAUCAGGAUGAAGGAUGAGCACUUCAGAGUAUGUGUGUGCCAUGAGCAAGU------------ACUUACAUAUGU-
......(----(.(((((....(((((((......))))))).....))))).))........(((((((.((((.........))------------)).)))))))..- ( -29.40)
>DroSec_CAF1 89457 94 - 1
CACUCAG----CCCAUCCGAUGCUUGAUGGCCAUACAUCAGGAUGAAGGAUGAGCACUCCAGAGGAUGUGUGUGUCAUGAGCAAGU------------ACUUACAUAUGU-
..((((.----..(((((....(((((((......))))))).....))))).(((((((...))).))))......)))).....------------............- ( -26.10)
>DroSim_CAF1 89691 94 - 1
CACUCAG----CCCAUCCGAUGCUUGAUGGCCAUACAUCAGGAUGAAGGAUGAGCACUCCAGAGGAUGUGUGUGCCAUGAGCAAGU------------ACUUACAUAUGU-
.......----.........(((((.(((((((((((((....((.((........)).))...)))))))).))))))))))...------------............- ( -27.10)
>DroEre_CAF1 91077 94 - 1
CACUCAU----CCCAUCCGAUGCUUGAUGGCCAUACAUCAGGAUGAAGGAUGAGCACUCCAGAGGAUGUGUGUGCCAUGAGCAAGU------------ACUUACAUAUGU-
..(((((----(((((((((((..((.....))..)))).)))))..)))))))...........(((((.((((.........))------------)).)))))....- ( -28.00)
>DroYak_CAF1 93767 98 - 1
CACUCCCUCCGCUCAUCCGAUGCUUGAUGGCCAUACAUCAGGAUGAAGGAUGAGCACUCCAAAGGAUGUGUGUGCCAUGAGCAAGU------------ACUUACAUAUGU-
..........((((((((....(((((((......))))))).....))))))))..........(((((.((((.........))------------)).)))))....- ( -31.70)
>DroAna_CAF1 83848 107 - 1
CCCUUAU----CCAUUCCUAUGCAUGAUGGCCAUACAUCAAGAUGAAGGAUGAGCACUCCGGAGGAUGCAUGUGCCGUGUGCAAGUGUACCAUUCCGCACUUACAUAUGUG
..(((((----((.(((.....(.(((((......))))).)..)))))))))).....((((((.(((((.(((.....))).)))))))..))))(((........))) ( -28.60)
>consensus
CACUCAG____CCCAUCCGAUGCUUGAUGGCCAUACAUCAGGAUGAAGGAUGAGCACUCCAGAGGAUGUGUGUGCCAUGAGCAAGU____________ACUUACAUAUGU_
....................(((((.(((((((((((((....((.((........)).))...)))))))).))))))))))............................ (-25.48 = -24.98 +  -0.50)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:14:10 2006