| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 11,896,545 – 11,896,641 |
| Length | 96 |
| Max. P | 0.521860 |
| Location | 11,896,545 – 11,896,641 |
|---|---|
| Length | 96 |
| Sequences | 5 |
| Columns | 108 |
| Reading direction | reverse |
| Mean pairwise identity | 67.85 |
| Mean single sequence MFE | -15.88 |
| Consensus MFE | -8.86 |
| Energy contribution | -8.62 |
| Covariance contribution | -0.24 |
| Combinations/Pair | 1.47 |
| Mean z-score | -1.42 |
| Structure conservation index | 0.56 |
| SVM decision value | -0.02 |
| SVM RNA-class probability | 0.521860 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 11896545 96 - 23771897 UACAUUCUCUGGGAUAUUAAAACAAAAACAC--AUAUUG-ACUAUCAAAAUGUGGCCAUUUUGUAUAAAUAUAUAAGAUGAAAAC-A-----ACAA-AAAAAGGUA-- ....((((((...(((((.(.((((((.(((--((.(((-.....))).)))))....)))))).).)))))...))).)))...-.-----....-.........-- ( -15.90) >DroSec_CAF1 72400 97 - 1 UACAUUCCCUGGGAUAUUAAAAUGACAACGC--AUAUGG-ACCAUAAAAAUGUGGCCAUCUUGUAUAAAUCCAUAAGAUGAAAAC-A-----ACAACAAAAAUGUA-- ...((((....))))..............((--((..((-.(((((....)))))))(((((((........)))))))......-.-----.........)))).-- ( -15.00) >DroSim_CAF1 72957 96 - 1 UACAUUCUCUGGGAUAUUAAAAUGAAAACAC--AUGUGG-AUCAUAAA-AUUUGGCCAUUUUGUAUAAAUACAUAAGAUGAAAAC-A-----ACAACAAAAAUGUA-- ((((((...((..........((((...((.--...)).-.))))...-.......((((((((........)))))))).....-.-----....))..))))))-- ( -9.40) >DroEre_CAF1 73812 103 - 1 UAAAGACUUACAA--ACUUAAAUGAAUAUACACAUAUAGCACCAUAA-AAUGUGGUCAGUUUGUAUAA-AAUAUAAGCUGAAGAGCUAUGGUAUC-UAUAACUACAUA .............--...........((((....((((((.((((..-...))))(((((((((((..-.)))))))))))...)))))).....-))))........ ( -19.80) >DroYak_CAF1 75482 104 - 1 CGCUUUCUCUGGG--ACUCACAUGAAUAUAC--AUAGAGCACCAUAAAAAUGUGGUUGGUUUGUAUAAAAAUACAUGCUGAGAAGCUAUGACAUAAUAAAACUGCAUC .((((.((((((.--.(((..(((......)--)).)))..))).............(((.(((((....))))).))))))))))...................... ( -19.30) >consensus UACAUUCUCUGGGAUAUUAAAAUGAAAACAC__AUAUAG_ACCAUAAAAAUGUGGCCAUUUUGUAUAAAUAUAUAAGAUGAAAAC_A_____ACAACAAAAAUGUA__ .........................................(((((....))))).((((((((((....))))))))))............................ ( -8.86 = -8.62 + -0.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:14:08 2006