Locus 4084

Sequence ID 3L_DroMel_CAF1
Location 11,892,301 – 11,892,391
Length 90
Max. P 0.819040
window6355

overview

Window 5

Location 11,892,301 – 11,892,391
Length 90
Sequences 6
Columns 94
Reading direction reverse
Mean pairwise identity 75.76
Mean single sequence MFE -23.35
Consensus MFE -13.00
Energy contribution -15.03
Covariance contribution 2.03
Combinations/Pair 1.21
Mean z-score -1.80
Structure conservation index 0.56
SVM decision value 0.67
SVM RNA-class probability 0.819040
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 11892301 90 - 23771897
UUAUAAGUUGCAUGCAGCAAAGUAUGCAGCAGA--AAAUAUCGGGGGCAUCUGCGUUUGUAAGGUGACGCAAGGUGUGAUG--ACGUCAUUUGU
......(((((((((......))))))))).((--...((((....(((((((((((........))))).))))))))))--...))...... ( -28.10)
>DroSec_CAF1 68136 88 - 1
UCAUGAGUUGCAUGCAGCAAAGUAUGCACCAGA--AAAUAU--GAAGCAUCUGCGUUUGUAAGGUGACGCAAGGUGUGAUG--ACGUUAUUUGU
((((..(.(((((((......))))))).)...--......--...(((((((((((........))))).)))))).)))--).......... ( -23.60)
>DroSim_CAF1 68775 88 - 1
UCAUGAGUUGCAUGCAGCAAAGUAUGCAGCACA--AAAUAU--GAGGCAUCUGCGUUUGUAAGGUGACGCAAGGUGUGAUG--ACGUCAUUUGU
((((..(((((((((......)))))))))...--......--...(((((((((((........))))).)))))).)))--).......... ( -27.90)
>DroEre_CAF1 69617 87 - 1
UCAUGAGUUGCAUGCCGCAAAGUAUGCAACAUA--AAGUAU--AAGCCAUCUGCGUUUGUAAGGUCACCGAAGUUUCCACA--ACU-AUUAUGU
.((((((((((((((......)))))))))...--...(((--(((((....).))))))).((..((....))..))...--...-.))))). ( -20.20)
>DroYak_CAF1 70664 89 - 1
UCACAAGUUGCAUGCAGCAAAGUAUGCAGCAGA--AAGUAU--AAGCCAUCUGAGUUUGUAAGGUGACGCAAGGUGUGACGUCACG-AAUUCGU
......(((((((((......)))))))))(((--..((..--..))..)))((((((((.(.((.((((...)))).)).).)))-))))).. ( -28.00)
>DroPer_CAF1 64494 86 - 1
UCAAAAGAUUGAUGCUCGAAAGUAUGCAA-AGACUAUACAU--ACGAUAUGUCAGAGUGCAAGGUGACUCAAGAUGGGAAA--AUGUGA---GU
(((.....(((.(((((....(((((...-........)))--))((....)).))))))))..)))((((..((......--)).)))---). ( -12.30)
>consensus
UCAUAAGUUGCAUGCAGCAAAGUAUGCAGCAGA__AAAUAU__AAGGCAUCUGCGUUUGUAAGGUGACGCAAGGUGUGAUG__ACGUAAUUUGU
......(((((((((......))))))))).................((((((((((........))))).))))).................. (-13.00 = -15.03 +   2.03)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:14:05 2006