| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 11,891,283 – 11,891,399 |
| Length | 116 |
| Max. P | 0.579470 |
| Location | 11,891,283 – 11,891,399 |
|---|---|
| Length | 116 |
| Sequences | 4 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 83.95 |
| Mean single sequence MFE | -29.75 |
| Consensus MFE | -23.09 |
| Energy contribution | -23.03 |
| Covariance contribution | -0.06 |
| Combinations/Pair | 1.16 |
| Mean z-score | -1.51 |
| Structure conservation index | 0.78 |
| SVM decision value | 0.09 |
| SVM RNA-class probability | 0.579470 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 11891283 116 + 23771897 GUCCAGGCAAAAUAAUCUGUGUACCUGGUACCUUUCAGUUAGAAAGAUCUAUUGUUCUUCUGAGGAUUUUCGUAAUGGAAAGUAAGGUGAGUAGUUGGUUUAAGCUUGACACUUGA---- (((.((((.((((...(((..(((((.....(((((.((((..(((((((...(.....)...)))))))..)))).)))))..)))))..)))...))))..)))))))......---- ( -26.80) >DroSec_CAF1 67256 106 + 1 GUCCAGGCAAAAUAAUCUGUGUACCCGGUAACUUUCAGUUAGAAGGAUCUAUUGUUCUUCUGAGAACUUUCGUAAUGAAAAGUAAGGUGAGUAGU----UUCAGCUUGAG---------- ...(((((..((....(((..((((...((..(((((.((((((((((.....))))))))))((....))....)))))..)).))))..))).----))..)))))..---------- ( -22.80) >DroSim_CAF1 67792 112 + 1 GUCCAGGCAAAAUAAUCUGUGUACCCGGUACCUUGCAGUUAGAAGGAUCUAUUGUUCUUCUGAGGAUUUUCGUAAUGAAAAGUAAGGUGAGUAGU----UUCAGCCUGACACCUAA---- (((.((((........(((......)))((((((((..((((((((((.....))))))))))...(((((.....)))))))))))))......----....)))))))......---- ( -31.40) >DroYak_CAF1 69707 120 + 1 GUUCAGGCAAAAUAAUCUGUAUACCUGGUACUUUUCAUUUAGCAGGAUCUAUUGUUCUGCUGAGGAGUUUCCUAAUGGAAAGUAAGGUGAGCACUUGGUUUCAGCUUGACUCUUAAUACU ..((((((.((((....(((.(((((..((((((((((((((((((((.....)))))))))(((.....))))))))))))))))))).)))....))))..))))))........... ( -38.00) >consensus GUCCAGGCAAAAUAAUCUGUGUACCCGGUACCUUUCAGUUAGAAGGAUCUAUUGUUCUUCUGAGGAUUUUCGUAAUGAAAAGUAAGGUGAGUAGU____UUCAGCUUGACACUUAA____ ...(((((........(((..((((...(((.(((((.((((((((((.....))))))))))((....))....))))).))).))))..))).........)))))............ (-23.09 = -23.03 + -0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:14:04 2006