Locus 4082

Sequence ID 3L_DroMel_CAF1
Location 11,889,462 – 11,889,571
Length 109
Max. P 0.742364
window6353

overview

Window 3

Location 11,889,462 – 11,889,571
Length 109
Sequences 5
Columns 116
Reading direction reverse
Mean pairwise identity 83.32
Mean single sequence MFE -21.62
Consensus MFE -16.08
Energy contribution -16.76
Covariance contribution 0.68
Combinations/Pair 1.09
Mean z-score -1.80
Structure conservation index 0.74
SVM decision value 0.45
SVM RNA-class probability 0.742364
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 11889462 109 - 23771897
UAACCUACAUCCCAUUCAUUCUCUAGAAGCACCCAUUA-------AACCACCUAACCACCAAGACUUGACCACUGAAAAGUUGGCCAAGUUAGCGCUGUAAUGUGGCCAAAAAGAA
....((((((..((....(((....)))..........-------.................((((((.(((((....)).))).)))))).....))..)))))).......... ( -18.40)
>DroSec_CAF1 65521 105 - 1
UAACCCACAUCUCAUUCAUUCUCAGGAAGCACCCAUUA-------A-CCA-CUAACCACUAAGACU-GGCCACUGAAAAGUUGGCCAAGUUAGCGCUGUAAUGUGGCCAA-AAGAA
....((((((..((..........((......))....-------.-...-...........((((-(((((((....)).))))).)))).....))..))))))....-..... ( -24.10)
>DroSim_CAF1 66031 109 - 1
UAACCCACAUCCCAUUCAUUCUCUGGAAGCACCCAUUA-------AACCACCUAACCACCAAGACUUGACCACUGAAAAGUUGGCCAAGUUAGCGCUGUAAUGUGGCCAAAAAGAA
....((((((..((.........(((......)))...-------.................((((((.(((((....)).))).)))))).....))..)))))).......... ( -22.40)
>DroEre_CAF1 66955 114 - 1
UAACCCACAUCCCAUUCCUUCCUUGGAGCCACCCAUUUGGCCACCAACCGCCCAUCCACCAAGUCCUGACCACUGAAAAGUUGGCCAAGUUAGCGCUGCAAUGUGGCCAAA--CUA
....((((((..((...((..(((((.((((......))))............................(((((....)).))))))))..))...))..)))))).....--... ( -25.40)
>DroYak_CAF1 67929 103 - 1
UAACCCACAUCCCAUUCAUUCUUUAGAACCACCACCUU-----------ACCCAUCCACCAAGUCUUGACCACUGAAAACUUGGCCAAGUUAGCGCUGUAAUGUGGGCAAA--GUA
...(((((((..((....(((....)))..........-----------.........((((((.((........)).))))))............))..)))))))....--... ( -17.80)
>consensus
UAACCCACAUCCCAUUCAUUCUCUGGAAGCACCCAUUA_______AACCACCUAACCACCAAGACUUGACCACUGAAAAGUUGGCCAAGUUAGCGCUGUAAUGUGGCCAAAAAGAA
....((((((..((....(((....)))..................................((((((.(((((....)).))).)))))).....))..)))))).......... (-16.08 = -16.76 +   0.68)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:14:03 2006