Locus 4081

Sequence ID 3L_DroMel_CAF1
Location 11,888,880 – 11,888,972
Length 92
Max. P 0.771986
window6352

overview

Window 2

Location 11,888,880 – 11,888,972
Length 92
Sequences 6
Columns 99
Reading direction reverse
Mean pairwise identity 82.06
Mean single sequence MFE -29.23
Consensus MFE -16.57
Energy contribution -15.52
Covariance contribution -1.05
Combinations/Pair 1.27
Mean z-score -2.73
Structure conservation index 0.57
SVM decision value 0.53
SVM RNA-class probability 0.771986
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 11888880 92 - 23771897
CGUUUCCAU------CGCUGCUGCUUUUUGUGACAUUUUCGCAGAAGGUU-UUUGCAUUCGUGCAACUUUUUGUGCAUCGCACUGCGUUUUAUGGGGGA
..(..((((------((((((.(((((((((((.....))))))))))).-...)))...(..(((....)))..)........)))....))))..). ( -27.40)
>DroPse_CAF1 62733 90 - 1
AGCUCCAGG------CCCGAAUGCUUUUUGUGACAUUUUUGCAGAAGGUUUUUUGCAUUCGUGCAACUUUUUGUU---GGCACUGCGGUUUCUGGGGCA
.((((((((------.(((((.((((((((..(.....)..)))))))).))).(((...(((((((.....)))---.)))))))))..)))))))). ( -33.60)
>DroSim_CAF1 65427 92 - 1
CGUUUCCAU------CGCUGCUGCUUUUUGUGACAUUUUCGCAGAAGGUU-UUUGCAUUCGUGCAACUUUUUGUGCACCGCACUGCAUUUUAUGGUGGA
....(((((------(((....(((((((((((.....))))))))))).-...))....(((((.......((((...))))))))).....)))))) ( -28.11)
>DroEre_CAF1 66358 83 - 1
---------------CGCUGCUGCUUUUUGUGACAUUUUCGCAGAAGGUU-UUUGCAUUCGUGCAACUUUUUGUGCACCGCACUGCAUUUUAUGGGGGA
---------------.(((((.(((((((((((.....))))))))))).-...)))...(((((.(.....)))))).)).((.(((...))).)).. ( -24.00)
>DroYak_CAF1 67303 98 - 1
CGUUCCCAUAGCUUCUGCUGCUGGUUUUUGUGACAUUUUCGCAGAGGGUU-UUUGCAUUCGUGCAACUUUUUGUGCACCGCACUGCGUUUUAUGGGGGA
..((((((((((((((((.....(((.....)))......)))))))((.-..(((....(((((.(.....)))))).)))..))...))))))))). ( -28.70)
>DroPer_CAF1 61955 90 - 1
AGCUCCAGG------CCCGAAUGCUUUUUGUGACAUUUUUGCAGAAGGUUUUUUGCAUUCGUGCAACUUUUUGUU---GGCACUGCGGUUUCUGGGGCA
.((((((((------.(((((.((((((((..(.....)..)))))))).))).(((...(((((((.....)))---.)))))))))..)))))))). ( -33.60)
>consensus
CGUUCCCAU______CGCUGCUGCUUUUUGUGACAUUUUCGCAGAAGGUU_UUUGCAUUCGUGCAACUUUUUGUGCACCGCACUGCGUUUUAUGGGGGA
...............((.(((.(((((((((((.....)))))))))))...(((((....)))))........))).))..((.(((...))).)).. (-16.57 = -15.52 +  -1.05)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:14:02 2006