| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 11,881,620 – 11,881,712 |
| Length | 92 |
| Max. P | 0.615181 |
| Location | 11,881,620 – 11,881,712 |
|---|---|
| Length | 92 |
| Sequences | 6 |
| Columns | 109 |
| Reading direction | reverse |
| Mean pairwise identity | 76.40 |
| Mean single sequence MFE | -15.55 |
| Consensus MFE | -11.17 |
| Energy contribution | -10.78 |
| Covariance contribution | -0.39 |
| Combinations/Pair | 1.21 |
| Mean z-score | -0.97 |
| Structure conservation index | 0.72 |
| SVM decision value | 0.17 |
| SVM RNA-class probability | 0.615181 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 11881620 92 - 23771897 A-AAUGCU------ACAAAAAAUUGAGCACAACACAUUAAAUGUAAA-----UCAACAUUAGCUACGACAUUAUGAUUAUGCUGAUGG----ACAGAAACAUUUGGG-U .-..((((------.(((....))))))).......((((((((...-----....(((((((.................))))))).----......)))))))).-. ( -16.97) >DroVir_CAF1 72621 91 - 1 A-AAUGGU------ACAACAAAUUAAACACAACACAUUAAAUGCAAA-----UACACAUUAGCCGG-AGGCUGUGUUUAUGCUGAUGG----ACAGCAGCAUUUACC-U .-...(((------(........(((((((.........((((....-----....))))((((..-.)))))))))))(((((....----.))))).....))))-. ( -20.00) >DroPse_CAF1 55543 102 - 1 A-AACGGUUGCAACACAAAAAAUUUAACACAACACAUUUAAUGUAAAAAAAAGAAACAUUAGCUACGACAUUAUGAUGAUGCUGAUGG----ACAAGAACAUUUGG--C .-.............((((..............((((...))))............(((((((..((.(.....).))..))))))).----.........)))).--. ( -9.30) >DroGri_CAF1 59766 91 - 1 A-AAUGUU------ACAAAAAAUUGCACACAACACAUUAAAUGCAAA-----UAAACGUUAGCUAG-GGGCUGUGUUUAUGCUGAUGG----ACAGCAACAUUUACC-U (-((((((------........(((((..............)))))(-----(((((((.(((...-..)))))))))))((((....----.)))))))))))...-. ( -16.84) >DroMoj_CAF1 76458 93 - 1 A-AAUGGU------ACAAAAAAUUAAACACAACACAUUAAAUGCAAA-----UCAACAUUAGCUAU-A--CGGUUUUUAUGCUGAUGGACGGACAGCAGCAUUUACC-U .-......------.......................(((((((...-----((..(((((((...-.--..........)))))))....)).....)))))))..-. ( -13.64) >DroAna_CAF1 54370 94 - 1 AAAAUGUU------ACAAAAAAUUGGGCCCAACACAUUAAAUGUAAA-----GCAACAUUAGCUACGACAUUAUGAUUAUGCUGAUGG----ACCGAAACAUUUGGGGC ........------............((((.......(((((((...-----....(((((((.................))))))).----......))))))))))) ( -16.58) >consensus A_AAUGGU______ACAAAAAAUUGAACACAACACAUUAAAUGCAAA_____UAAACAUUAGCUAC_ACACUAUGAUUAUGCUGAUGG____ACAGCAACAUUUACC_U .....................................(((((((............(((((((.................)))))))...........))))))).... (-11.17 = -10.78 + -0.39)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:13:58 2006