Locus 4077

Sequence ID 3L_DroMel_CAF1
Location 11,880,289 – 11,880,386
Length 97
Max. P 0.938109
window6347

overview

Window 7

Location 11,880,289 – 11,880,386
Length 97
Sequences 6
Columns 97
Reading direction reverse
Mean pairwise identity 76.98
Mean single sequence MFE -21.50
Consensus MFE -12.57
Energy contribution -12.02
Covariance contribution -0.55
Combinations/Pair 1.21
Mean z-score -2.12
Structure conservation index 0.58
SVM decision value 1.29
SVM RNA-class probability 0.938109
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 11880289 97 - 23771897
GUCAGCUGGCGCUGGUAACAAAUGAACUCAUUUGUUCUAAUUUAAUCUUAUUACAUGGAGAUUUAUUGCCUUGCGCAUGAUAUGGCAACCCUUUCCG
((((....((((.(((((((((((....)))))))........((((((........))))))...))))..))))......))))........... ( -24.80)
>DroVir_CAF1 71531 95 - 1
GU--ACUGGCCGCUAAAACAAAUGAACUCAUUUGUUUCAAUUUAAUCUUAUUACUCAAAGAUUUAUUGCUCUUCGCAUGGCAUGGCAGGCCUUUUAU
..--...(((((((((((((((((....)))))))))((((..((((((........)))))).))))..............)))).))))...... ( -24.00)
>DroPse_CAF1 54105 84 - 1
-UCCG-----------AGCAAAUGAACUCAUUUGUUCUAAUUUAAUCUUAUUACACGGAGAUUUAUUGCCCUGCGCAUGAUAUGGCAACCCUUU-GG
-.(((-----------((((((((....)))))))))......((((((........))))))..(((((.((.......)).)))))......-)) ( -17.40)
>DroEre_CAF1 57597 95 - 1
GUCAGCUGGCUCU-GUAACAAAUGAACUCAUUUGUUCUAAUUUAAUCUUAUUACAUGGAGAUUUAUUGCCUUGCGCAUGAUGUGGCAACCCUU-UCA
(((.((.(((...-..((((((((....)))))))).......((((((........))))))....)))..))((.....))))).......-... ( -18.50)
>DroMoj_CAF1 74740 95 - 1
GC--CUUGGCCCUUGAAACAAAUGAACUCAUUUGUUUCAAUUUAAUCUUAUUACUCAAAGAUUUAUUGCCUCUCGCACGGGUCGACAAGCCUUUUAC
((--.(((((((((((((((((((....))))))))))))...((((((........))))))...(((.....))).)))))))...))....... ( -26.90)
>DroPer_CAF1 53337 84 - 1
-UCCG-----------AGCAAAUGAACUCAUUUGUUCUAAUUUAAUCUUAUUACACGGAGAUUUAUUGCCCUGCGCAUGAUAUGGCAACCCUUU-GG
-.(((-----------((((((((....)))))))))......((((((........))))))..(((((.((.......)).)))))......-)) ( -17.40)
>consensus
GUC_GCUGGC_CU_G_AACAAAUGAACUCAUUUGUUCUAAUUUAAUCUUAUUACACGGAGAUUUAUUGCCCUGCGCAUGAUAUGGCAACCCUUUUAG
................((((((((....)))))))).......((((((........))))))..(((((.............)))))......... (-12.57 = -12.02 +  -0.55)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:13:57 2006