Locus 4076

Sequence ID 3L_DroMel_CAF1
Location 11,875,772 – 11,875,866
Length 94
Max. P 0.716387
window6346

overview

Window 6

Location 11,875,772 – 11,875,866
Length 94
Sequences 5
Columns 115
Reading direction forward
Mean pairwise identity 82.92
Mean single sequence MFE -26.82
Consensus MFE -14.52
Energy contribution -14.68
Covariance contribution 0.16
Combinations/Pair 1.16
Mean z-score -2.35
Structure conservation index 0.54
SVM decision value 0.39
SVM RNA-class probability 0.716387
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 11875772 94 + 23771897
ACAUGACAUGCGAUCUGCUGGUUA--------UA----UAUAUCGAAA---------AUAUACCAUAUGAGUAUGUACUGUACGAACUGCUUCUGUCGACCAGCAGAUAAAAACG
............(((((((((((.--------..----..........---------(((((((....).)))))).......(((....)))....)))))))))))....... ( -21.20)
>DroSec_CAF1 51217 94 + 1
ACAUGACAUGCGAUCUGCUGGCUA--------UA----UAUAUCGAGU---------AUAUACCAUAUGAGUAUGUACUGUACGAACUGCUUCUGUCGACCAGCAGAUAAAAACG
............(((((((((...--------..----.......(((---------(((((((....).)))))))))...(((.(.......)))).)))))))))....... ( -25.30)
>DroSim_CAF1 51684 94 + 1
ACAUGACAUGCGAUCUGCUGGCUA--------UA----UAUAUCGAGU---------AUAUACCAUAUGAGUGUGUACUGUACGAACUGCUUCUGUCGACCAGCAGAUAAAAACG
............(((((((((...--------..----.......(((---------(((((((....).)))))))))...(((.(.......)))).)))))))))....... ( -25.30)
>DroEre_CAF1 53231 108 + 1
ACAUGCCAUGCGAUCUGCUGAAUAUACGAGUAUAUAGCUAUAUCGAGU-------UUAUAUAGUAUAUGAGUGUGUGCUAUAUGAACAGCUUCUGUCGACCGGCAGAUAAAAACG
....((....((((..((((.((((....)))).))))...)))).((-------(((((((((((((....))))))))))))))).)).((((((....))))))........ ( -33.30)
>DroYak_CAF1 53151 107 + 1
ACAUGACAUGCGAUCUGCUGACUA--------UAUACGUAUAUCGAGUAAAUGUUGUAUAUAGUGUACGAGUAUGUAGUAUAUGAACUGCUUCUGUCGACCAGCAGAUAAAAACG
............((((((((((((--------((((((.((((.......))))))))))))))...(((....(((((......))))).....)))..))))))))....... ( -29.00)
>consensus
ACAUGACAUGCGAUCUGCUGGCUA________UA____UAUAUCGAGU_________AUAUACCAUAUGAGUAUGUACUGUACGAACUGCUUCUGUCGACCAGCAGAUAAAAACG
............(((((((((....................................((((((.......))))))......(((.(.......)))).)))))))))....... (-14.52 = -14.68 +   0.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:13:56 2006