Locus 4073

Sequence ID 3L_DroMel_CAF1
Location 11,863,684 – 11,863,775
Length 91
Max. P 0.659962
window6341

overview

Window 1

Location 11,863,684 – 11,863,775
Length 91
Sequences 6
Columns 94
Reading direction reverse
Mean pairwise identity 83.61
Mean single sequence MFE -22.25
Consensus MFE -14.27
Energy contribution -15.10
Covariance contribution 0.83
Combinations/Pair 1.00
Mean z-score -2.68
Structure conservation index 0.64
SVM decision value 0.27
SVM RNA-class probability 0.659962
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 11863684 91 - 23771897
AUCCGAGUCCUUUACGUCCUUCGAUAUUUCCACUUUCCAGCAGGAACUGCGCUAACAAUGCAA-AGGACACGGAAAAGCACAAUCACCCUC--A
.((((.(((((((..........................((((...))))((.......))))-))))).)))).................--. ( -21.30)
>DroSec_CAF1 39324 93 - 1
UUCCGAGUCCUUUUCGUCCUUCGACAUAUCCACUUUCCAGCAGGAACUGCGCUAACAAUGCAA-AGGACACGGAAAAGCACAAUCACCCUCUAA
(((((.(((((((..(((....)))..............((((...))))((.......))))-))))).)))))................... ( -22.80)
>DroSim_CAF1 39826 93 - 1
UUCCGAGUCCUUUUCGUCCUUCGACAUUUCCACUUUCCAGCAGGAACUGCGCUAACAAUGCAA-AGGACACGGAAAAGCACAAUCACCCUCUAA
(((((.(((((((..(((....)))..............((((...))))((.......))))-))))).)))))................... ( -22.80)
>DroEre_CAF1 41656 90 - 1
UUCCGAGUCGUUUUCCUCCUCCGAUAUUUCCACUUUCCUGCAGGAAGUUCGCUAACAAUGCAA-AGGACUCGGAAAAGCACAAUCACCAUC---
(((((((((.(((.........((.((((((...........))))))))((.......))))-).)))))))))................--- ( -23.00)
>DroYak_CAF1 40420 90 - 1
UUCCGAGUCCUUUUGCUCCUCCGAUAUUUCCACUUUCCAGCAGGAAGUUCGCUAACAAUGCAA-AGGACACGGAAAAGCACAAUCACCCUC---
(((((.(((((((.((.....(((.((((((...........)))))))))........))))-))))).)))))................--- ( -24.22)
>DroAna_CAF1 39204 81 - 1
GCCCGUAUCCUUCGCAUCCUUCGAU----------GCCGCCAGGAGUAGCGCUAACAAUGCAAAAGGACACGGAAAAGCACAAUCACCCCG---
((((((.(((((.((.((((.((..----------..))..))))...))((.......))..))))).))))....))............--- ( -19.40)
>consensus
UUCCGAGUCCUUUUCGUCCUUCGAUAUUUCCACUUUCCAGCAGGAACUGCGCUAACAAUGCAA_AGGACACGGAAAAGCACAAUCACCCUC___
.((((.(((((.......................((((....))))....((.......))...))))).)))).................... (-14.27 = -15.10 +   0.83)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:13:51 2006