Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 11,858,728 – 11,858,823 |
Length | 95 |
Max. P | 0.676714 |
Location | 11,858,728 – 11,858,823 |
---|---|
Length | 95 |
Sequences | 6 |
Columns | 98 |
Reading direction | reverse |
Mean pairwise identity | 83.80 |
Mean single sequence MFE | -24.25 |
Consensus MFE | -17.74 |
Energy contribution | -18.77 |
Covariance contribution | 1.03 |
Combinations/Pair | 1.05 |
Mean z-score | -2.14 |
Structure conservation index | 0.73 |
SVM decision value | 0.30 |
SVM RNA-class probability | 0.676714 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 11858728 95 - 23771897 CGUCUGCUGUGGUUUAUGUCCUCGUUGUUGACAUUUAGUUGACACACACACAACACGGCACUCCCCUGGCCCCUUUGGCACCCACAGCUCGUCCU--- ((...(((((((....((((...(((((..((.....))..))).)).........(((.(......)))).....)))).))))))).))....--- ( -25.70) >DroSec_CAF1 34620 93 - 1 CGUCUGCUGUGGUUUAUGUCCUCGUUGUUGACAUUUAGUUGACACA--CACAACACGGCACUCCCCUGGCCCCUUUGGCAACCACAGCUCGUCCU--- ((...((((((((...((((...(((((..((.....))..))).)--).......(((.(......)))).....)))))))))))).))....--- ( -27.70) >DroSim_CAF1 35086 93 - 1 CGUCUGCUGUGGUUUAUGUCCUCGUUGUUGACAUUUAGUUGACACA--CACAACACGGCACUCCCCUGGCCCCUUUGGCACCCACAGCUCGUCCU--- ((...(((((((....((((...(((((..((.....))..))).)--).......(((.(......)))).....)))).))))))).))....--- ( -25.70) >DroEre_CAF1 37099 95 - 1 -GUCUGCUGUGGUUUAUGUCCUCGUUGUUGACAUUUAGUUGACACA--CACAACACGGCUCUCCCCUGGCCCCUUUGGCAGCCACAGCUCCCCCUGCU -....((((((((...((((...(((((..((.....))..))).)--).......((((.......)))).....)))))))))))).......... ( -27.60) >DroYak_CAF1 35838 85 - 1 -GUCUGCUGUGGUUUAUGUCCUCGUUGUUGACAUUUAGUUGACACA--CACAACACGGC----------CCCCUUUGGCACCCACAGCUCGUCCUGCU -....(((((((...........(((((..((.....))..))).)--)........((----------(......)))..))))))).......... ( -23.10) >DroAna_CAF1 34531 77 - 1 -GUCUGCUGUGGUUUAUGUCCUCCUUGUUGACAUUUAGUUGACACA--CACCACACACA---C------------CAACACACACAGAUCCUUCU--- -(((((.(((((((..(((......(((..((.....))..)))..--........)))---.------------.))).)))))))))......--- ( -15.69) >consensus _GUCUGCUGUGGUUUAUGUCCUCGUUGUUGACAUUUAGUUGACACA__CACAACACGGCACUCCCCUGGCCCCUUUGGCACCCACAGCUCGUCCU___ .....(((((((....((((.....(((..((.....))..)))............(((.........))).....)))).))))))).......... (-17.74 = -18.77 + 1.03)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:13:48 2006