Locus 4070

Sequence ID 3L_DroMel_CAF1
Location 11,858,129 – 11,858,243
Length 114
Max. P 0.508034
window6337

overview

Window 7

Location 11,858,129 – 11,858,243
Length 114
Sequences 4
Columns 118
Reading direction forward
Mean pairwise identity 88.07
Mean single sequence MFE -37.00
Consensus MFE -27.36
Energy contribution -27.43
Covariance contribution 0.06
Combinations/Pair 1.12
Mean z-score -1.39
Structure conservation index 0.74
SVM decision value -0.05
SVM RNA-class probability 0.508034
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 11858129 114 + 23771897
UCGACUGCGAGGAGCACUUUUGGACUGGGUGGUUGGAUG----GAUGGUUGGGUCGAACUGGCUGGUAAAUGAAGUGCAAAACGGAACAAAAUGCGGACCGCGACUGUUUCAGUCGAA
((((((.......(((((((...((..(.(((((.(((.----.(....)..))).))))).)..))....))))))).....((((((...((((...))))..)))))))))))). ( -38.20)
>DroSec_CAF1 34068 118 + 1
UCGACUGGUAGGAGCACUUUUGGACUGGGUGGUUGGAUGGUUGGAUGGUCGGUUCGGUCUGGCUGGUAAAUGAAGUGCAAAACGGAACAAAAUGCGGACCGCGACUGUUUCAGUCGAA
((((((.......(((((((...((..(.(((((((((.(.........).)))))).))).)..))....))))))).....((((((...((((...))))..)))))))))))). ( -37.20)
>DroSim_CAF1 34507 118 + 1
UCGACUGGGAGGAGCACUUUUGGACUGGGUGGUUGGAUGGUUGGAUGGUCGGUUCGGUCUGGCUGGUAAAUGAAGUGCAAAACGGAACAAAAUGCGGACCGCGACUGUUUCAGUCGAA
(((((((..(.(.(((((((...((..(.(((((((((.(.........).)))))).))).)..))....)))))))....(((..(.......)..)))....).)..))))))). ( -38.00)
>DroEre_CAF1 36426 105 + 1
UCGACUGGGAGCAGCAAUUUUGGGCUGGGUG------------GAUGGCCAGUUCGCUCU-GCUGGUAAAUGAAGUGCAAAGCGGAACAAAAUGCGGACCGCGACUGUUUCACUCGAA
((((...((((((((...((((.(((..((.------------....((((((.......-))))))..))..))).))))((((..(.......)..))))).)))))))..)))). ( -34.60)
>consensus
UCGACUGGGAGGAGCACUUUUGGACUGGGUGGUUGGAUG____GAUGGUCGGUUCGGUCUGGCUGGUAAAUGAAGUGCAAAACGGAACAAAAUGCGGACCGCGACUGUUUCAGUCGAA
((((((.......(((((((...(((....................((((((......)))))))))....))))))).....((((((...((((...))))..)))))))))))). (-27.36 = -27.43 +   0.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:13:47 2006