Locus 4069

Sequence ID 3L_DroMel_CAF1
Location 11,856,611 – 11,856,701
Length 90
Max. P 0.802046
window6336

overview

Window 6

Location 11,856,611 – 11,856,701
Length 90
Sequences 6
Columns 105
Reading direction reverse
Mean pairwise identity 79.35
Mean single sequence MFE -17.58
Consensus MFE -11.27
Energy contribution -10.52
Covariance contribution -0.75
Combinations/Pair 1.31
Mean z-score -1.77
Structure conservation index 0.64
SVM decision value 0.62
SVM RNA-class probability 0.802046
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 11856611 90 - 23771897
---------------ACUAUAUUUUCUUGCAGCACUUACACUUCGCUCUCCUUAACAUCCGAGAACUUAGAGGCCUCCAGUUCACUGCUCAAAGCUUCUCGUUCC
---------------...............(((...........)))............(((((((((.(((.....(((....)))))).))).)))))).... ( -12.70)
>DroPse_CAF1 31361 89 - 1
---------------UCUAUAUUCCC-AAUACCACCUACACUUCGCUCUCCUUAACGUCCGAGAACUUGGAGGCUUCCAGCUCGCUGGUGAGAGCCUCCCGAUCC
---------------...........-...............(((.((((..........))))....((((((((((((....))))...)))))))))))... ( -22.20)
>DroSec_CAF1 32551 90 - 1
---------------GCUAUAUUAUCUUGAAAUACUUACACUUCACUCUCCUUGACAUCCGAGAACUUGGAGGCUUCCAGUUCACUGCUCAAAGCUUCUCGCUCC
---------------((.................................((((.....)))).....((((((((..(((.....)))..)))))))).))... ( -14.50)
>DroSim_CAF1 32987 90 - 1
---------------ACUAUAUUAUCUUGAAAUACUUACACUUCACUCUCCUUGACAUCCGAGAACUUGGAGGCCUCCAGUUCACUGCUCAAAGCUUCUCGUUCC
---------------............................................(((((((((.(((.....(((....)))))).))).)))))).... ( -12.40)
>DroYak_CAF1 33635 105 - 1
UUUAUAUUUCAUUAAAGUAUAUUUUCUUGGAACACUUACACUUCGCUCUCCUUGACAUCCGAGAACUUGGAGGCCUCCAGCUCACUGCUCAAAGCCUCUCGUUCC
..(((((((.....))))))).......(((((.................((((.....)))).....((((((....(((.....)))....)))))).))))) ( -21.80)
>DroPer_CAF1 31463 89 - 1
---------------UCUAUAUUCCC-AAUUCCACCUACACUUCGCUCUCCUUAACGUCCGAGAACUUGGAGGCUUCUAGCUCGCUGGUUAGAGCCUCCCGAUCC
---------------...........-...............(((.((((..........))))....(((((((.((((((....))))))))))))))))... ( -21.90)
>consensus
_______________ACUAUAUUAUCUUGAAACACUUACACUUCGCUCUCCUUAACAUCCGAGAACUUGGAGGCCUCCAGCUCACUGCUCAAAGCCUCUCGUUCC
..............................................((((..........))))....((((((...(((....)))......))))))...... (-11.27 = -10.52 +  -0.75)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:13:46 2006