Locus 4067

Sequence ID 3L_DroMel_CAF1
Location 11,851,341 – 11,851,437
Length 96
Max. P 0.847369
window6334

overview

Window 4

Location 11,851,341 – 11,851,437
Length 96
Sequences 5
Columns 96
Reading direction forward
Mean pairwise identity 91.04
Mean single sequence MFE -23.36
Consensus MFE -17.86
Energy contribution -16.94
Covariance contribution -0.92
Combinations/Pair 1.33
Mean z-score -2.00
Structure conservation index 0.76
SVM decision value 0.77
SVM RNA-class probability 0.847369
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 11851341 96 + 23771897
UGGCUAACCAGCCAAAUUAAUGGCACUUUAACUAGAUACUCACAUUGAAGUGAUAUGCUGGUUACUAUGCGAUUAUUAAAUUAGGUUUAAAUGUCA
(((((....)))))...((((.(((...((((((((((.((((......))))))).)))))))...))).))))..................... ( -23.30)
>DroSec_CAF1 27341 96 + 1
UGGCUAACCAGCCAAAUUAAUGGCACUUAAACUAGAUACUCACGUUGGAGUGGUAUGCUGGUUACUAUGCGAAUAUUAAAUUAGGCUUAAAUGUCA
.(((.....((((((.(((((((((....((((((((((.(((......))))))).))))))....)))...)))))).)).)))).....))). ( -24.90)
>DroSim_CAF1 27783 96 + 1
UGGCUAACCAGCCAAAUUAAUGGCACUUAAACUAGAUACUCACGUUGAAGUGGUAUGCUGGUUACUAUGCGAAUAUUAAAUUAGGCUUAAAUGUCA
.(((.....((((((.(((((((((....((((((((((.(((......))))))).))))))....)))...)))))).)).)))).....))). ( -24.90)
>DroEre_CAF1 26724 96 + 1
UGGCUAACCAGCCAAAUUAAUGGCACUUAAACUAGAUAUCCACGUUGAAGUGGGGCUCUGCUUACUAUGGGAAUAUUAAAUUAAGUUAAAAUGUCA
.(((......((((......))))((((((....(((((((.(((..(((..(....)..)))...))))).)))))...))))))......))). ( -21.20)
>DroYak_CAF1 28192 96 + 1
UGGCUAACCAGCCAAAUUAAUGGCACUUUAACUGGAUAUUCACGUUGAAGUGGGGUGCUAGUUACUAUGGGAAUAUUAAAUUAAGCUUAAAUGUCA
(((((....)))))......(((((...(((((((...(((((......)))))...)))))))...((((..((......))..))))..))))) ( -22.50)
>consensus
UGGCUAACCAGCCAAAUUAAUGGCACUUAAACUAGAUACUCACGUUGAAGUGGUAUGCUGGUUACUAUGCGAAUAUUAAAUUAGGCUUAAAUGUCA
.((((.....((((......)))).....((((((....((((......))))....))))))....................))))......... (-17.86 = -16.94 +  -0.92)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:13:44 2006