Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 11,844,450 – 11,844,550 |
Length | 100 |
Max. P | 0.516977 |
Location | 11,844,450 – 11,844,550 |
---|---|
Length | 100 |
Sequences | 4 |
Columns | 110 |
Reading direction | forward |
Mean pairwise identity | 81.36 |
Mean single sequence MFE | -26.67 |
Consensus MFE | -15.89 |
Energy contribution | -18.57 |
Covariance contribution | 2.69 |
Combinations/Pair | 1.08 |
Mean z-score | -1.82 |
Structure conservation index | 0.60 |
SVM decision value | -0.03 |
SVM RNA-class probability | 0.516977 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 11844450 100 + 23771897 AAAAUUUUAGUUCCAGGAUCUAAGGCAUUGGAAUGACAU----------UUUUCAGGACCUGCUAUUGUAUGAUUUGCAGUGGCAGUCCAGAACAGUAGACAACCAUAUU .........(((((((..(.....)..)))))))...((----------(.(((.((((.((((((((((.....)))))))))))))).))).)))............. ( -26.90) >DroSec_CAF1 20476 110 + 1 AAAAUUGUAGUGCCAGGAUCUAAGGCAUUGGAACGGCAUAAGUAAAUGUUUAACAGAACCUGCUAUUGUAUGAUUUGCAGUGGCAGUCCAGAACAGUAGACAACCAUAUU ...(((((((((((.........))))))(((..(((((......))))).........(((((((((((.....))))))))))))))...)))))............. ( -28.20) >DroSim_CAF1 21599 110 + 1 AAAAUUUUAGUGCCAGGAUCUAAGGCAUUCGAACGGCAUAAGUAAAUGUUUAACAGAACCUACUAUUGUAUGAUUUGCAGUGGCAGUCCGGAACAGUAGACAACCAUAUU ....(((.((((((.........)))))).))).((...........((((....))))...(((((((.((..((((....))))..))..)))))))....))..... ( -19.80) >DroYak_CAF1 21144 108 + 1 AAAAUUUUAGUGUCAGCAUUUUAGC--UGGAAACGCGUUAAGUAAAUAUUUUACAGGACUGGCUGUUGUAUAAUUUGCAUUGGCAGUCCAGAACAGUUGACAACCAAAUG ...((((...(((((((...(((((--((....)).)))))((((.....)))).((((((.(...((((.....))))..).))))))......)))))))...)))). ( -31.80) >consensus AAAAUUUUAGUGCCAGGAUCUAAGGCAUUGGAACGGCAUAAGUAAAUGUUUAACAGAACCUGCUAUUGUAUGAUUUGCAGUGGCAGUCCAGAACAGUAGACAACCAUAUU ....((((((((((.........))))))))))......................((((.((((((((((.....))))))))))))))..................... (-15.89 = -18.57 + 2.69)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:13:42 2006