| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 11,840,933 – 11,841,063 |
| Length | 130 |
| Max. P | 0.906688 |
| Location | 11,840,933 – 11,841,027 |
|---|---|
| Length | 94 |
| Sequences | 6 |
| Columns | 104 |
| Reading direction | reverse |
| Mean pairwise identity | 81.25 |
| Mean single sequence MFE | -30.44 |
| Consensus MFE | -20.51 |
| Energy contribution | -21.90 |
| Covariance contribution | 1.39 |
| Combinations/Pair | 1.08 |
| Mean z-score | -1.55 |
| Structure conservation index | 0.67 |
| SVM decision value | 0.19 |
| SVM RNA-class probability | 0.627503 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 11840933 94 - 23771897 CAUCCGAUGGCCAACAAUCCAGCUGGGCCCCAUUGGGCCUCCGGUGCUGCUGCUGUGGCAGACUAGUCGAUGAUUAAAAACUCUUAAUUGUUGG---------- .........((((......((((.((((((....)))))).....))))......))))........(((..(((((......)))))..))).---------- ( -28.30) >DroSec_CAF1 17023 94 - 1 CAUCCGAUGGCCAACAAUCCAGCUGGGCCCCAUUGGGCCUCCGCUGCUGCUGUUGUGGCCGACUAGUCGAUGAUUAAAAACUCUUAAUUGUUGG---------- .......((((((.((((.((((.((((((....)))))).....))))..))))))))))......(((..(((((......)))))..))).---------- ( -34.00) >DroSim_CAF1 16603 94 - 1 CAUCCGACGGCCAACAAUCCAGCUGGGCCCCAUUGGGCCUCCGCUGCUGCUGUUGUGGCCGACUAGUCGAUGAUUAAAAACUCUUAAUUGUUGG---------- .......((((((.((((.((((.((((((....)))))).....))))..))))))))))......(((..(((((......)))))..))).---------- ( -36.00) >DroEre_CAF1 16536 91 - 1 CAUCCAAUGGCCAACAAUCCAGCUGGGCCCCUUUGGGCCUCCGCUGCUGC---UGUGGCGGACUAGUCGAUGAUUAAAAACUCUUAAUUGUUGG---------- ..........(((((.(((..(((((((((....)))))(((((..(...---.)..))))).)))).)))((((((......)))))))))))---------- ( -31.30) >DroYak_CAF1 17615 90 - 1 CAUCGAAGGGCCAACAAUCCAGCUGGGUC-CUGUGGGCCUACGCCGCUGC---UGUGGCAGACUAGUCGAUGAUUAAAAACUCUUAAUUGUUGG---------- ((((((.(((((.(((((((....)))).-.))).)))))..(((((...---.))))).......))))))......................---------- ( -30.80) >DroAna_CAF1 15894 91 - 1 CAAACAAU--------AUCCAGCUGGGCACUUUCGGGCCUCCGCUGGGAC-----GAGCAAGCUAGUCGAUGAUUAAAAACUCUUAAUUGACGGGGAUCUGGAU ....((..--------((((((((..((.(.(((.(((....))).))).-----).)).)))).((((((...............))))))..)))).))... ( -22.26) >consensus CAUCCAAUGGCCAACAAUCCAGCUGGGCCCCAUUGGGCCUCCGCUGCUGC___UGUGGCAGACUAGUCGAUGAUUAAAAACUCUUAAUUGUUGG__________ .........((((......((((.((((((....)))))).....))))......))))........((((((((((......))))))))))........... (-20.51 = -21.90 + 1.39)
| Location | 11,840,963 – 11,841,063 |
|---|---|
| Length | 100 |
| Sequences | 5 |
| Columns | 100 |
| Reading direction | reverse |
| Mean pairwise identity | 84.63 |
| Mean single sequence MFE | -31.75 |
| Consensus MFE | -21.87 |
| Energy contribution | -23.11 |
| Covariance contribution | 1.24 |
| Combinations/Pair | 1.05 |
| Mean z-score | -2.41 |
| Structure conservation index | 0.69 |
| SVM decision value | 1.05 |
| SVM RNA-class probability | 0.906688 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 11840963 100 - 23771897 ACAAAGGCCAUCCAACAUCCAGGAUCCAACAUCCACCAUCCGAUGGCCAACAAUCCAGCUGGGCCCCAUUGGGCCUCCGGUGCUGCUGCUGUGGCAGACU .....(((((((.........((((.....)))).......))))))).......((((.((((((....)))))).....))))((((....))))... ( -34.79) >DroSec_CAF1 17053 86 - 1 ACAAAGGCCAUCCAA--------------CAUCCAGCAUCCGAUGGCCAACAAUCCAGCUGGGCCCCAUUGGGCCUCCGCUGCUGCUGUUGUGGCCGACU .....(((((..(((--------------((..((((....(((........))).(((.((((((....))))).).))))))).)))))))))).... ( -34.00) >DroSim_CAF1 16633 93 - 1 ACAAAGGCCAUCCAACAUC-------CAACAUCCAGCAUCCGACGGCCAACAAUCCAGCUGGGCCCCAUUGGGCCUCCGCUGCUGCUGUUGUGGCCGACU .....(((((.........-------(((((..(((((..((.((((..........))))(((((....)))))..)).))))).)))))))))).... ( -32.40) >DroEre_CAF1 16566 90 - 1 ACAAAGGCCAUCCAACAUC-------CAACAUCCAGCAUCCAAUGGCCAACAAUCCAGCUGGGCCCCUUUGGGCCUCCGCUGCUGC---UGUGGCGGACU .....((((((........-------................)))))).............(((((....)))))(((((..(...---.)..))))).. ( -29.96) >DroYak_CAF1 17645 96 - 1 ACAAAGGCCAUCCAACAUCCAGUAUCCAACAUCCAGCAUCGAAGGGCCAACAAUCCAGCUGGGUC-CUGUGGGCCUACGCCGCUGC---UGUGGCAGACU ....(((((...((..(((((((........((.......)).(((.......))).))))))).-.))..)))))..(((((...---.)))))..... ( -27.60) >consensus ACAAAGGCCAUCCAACAUC_______CAACAUCCAGCAUCCGAUGGCCAACAAUCCAGCUGGGCCCCAUUGGGCCUCCGCUGCUGCUG_UGUGGCAGACU .....(((((((.............................)))))))........(((.((((((....))))))..)))((..(....)..))..... (-21.87 = -23.11 + 1.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:13:38 2006