Locus 4061

Sequence ID 3L_DroMel_CAF1
Location 11,840,771 – 11,840,865
Length 94
Max. P 0.584323
window6325

overview

Window 5

Location 11,840,771 – 11,840,865
Length 94
Sequences 6
Columns 94
Reading direction reverse
Mean pairwise identity 91.28
Mean single sequence MFE -21.39
Consensus MFE -18.61
Energy contribution -19.17
Covariance contribution 0.56
Combinations/Pair 1.11
Mean z-score -1.41
Structure conservation index 0.87
SVM decision value 0.10
SVM RNA-class probability 0.584323
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 11840771 94 - 23771897
GGUCGGGCAACUUCAUGCGAGCUUUUCAAUCCGGUUUGCAUAUUUAACCGUAAUACCUACAAUCCCUGAAUACCCGGAUAACUUUUAUGCCUGU
...((((((.....(((((((((.........)))))))))....................((((..........))))........)))))). ( -19.40)
>DroSec_CAF1 16861 94 - 1
GGUCGGGCAACUUCAUGCGAGCUUUUCAAUCCGGUUCGCAUAUUUAACCGUAAUACCUACAAUCCCUGAAUACCCGGAUAACUUUUAUGCCUGU
...((((((.....(((((((((.........)))))))))....................((((..........))))........)))))). ( -21.50)
>DroSim_CAF1 16441 94 - 1
GGUCGGGCAACUUCAUGCGAGCUUUUCAAUCCGGUUCGCAUAUUUAACCAUAAUACCUACAAUCCCUGAAUACCCGGAUAACUUUUAUGCCUGU
...((((((.....(((((((((.........)))))))))....................((((..........))))........)))))). ( -21.50)
>DroEre_CAF1 16373 94 - 1
GGUCGGGCAACUCCAUGCGAGCUUUUCAAUCCGGUUCGCAUAUUUAAGCGUAAUACCUUCAAUCCCUGAAUACCCGGAUAACUUUUACGCCUGC
...(((((......(((((((((.........)))))))))........((((........((((..........)))).....))))))))). ( -21.52)
>DroYak_CAF1 17451 94 - 1
GGUCGGGCAACUUCAUGCGAGCUUUUCAAUCCGGUUCGCAUAUUUAACCGUAAUACCUACAAUCCCUGAAUACCCGGAUAACUUUUAUGCCUGC
...((((((.....(((((((((.........)))))))))....................((((..........))))........)))))). ( -21.30)
>DroAna_CAF1 15703 85 - 1
GGUUGGGCAACUUUGUGCGAGCUUUUCAAUCUGGUUCGCAUAUUUAAGCUUAAUACCUACAAUCCCUG-------GGCCAACUUUUAUGCCG--
((((((((.....((((((((((.........)))))))))).....))......((((.......))-------)))))))).........-- ( -23.10)
>consensus
GGUCGGGCAACUUCAUGCGAGCUUUUCAAUCCGGUUCGCAUAUUUAACCGUAAUACCUACAAUCCCUGAAUACCCGGAUAACUUUUAUGCCUGU
...((((((.....(((((((((.........)))))))))....................((((..........))))........)))))). (-18.61 = -19.17 +   0.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:13:36 2006