Locus 4058

Sequence ID 3L_DroMel_CAF1
Location 11,835,124 – 11,835,239
Length 115
Max. P 0.737009
window6321

overview

Window 1

Location 11,835,124 – 11,835,239
Length 115
Sequences 5
Columns 115
Reading direction forward
Mean pairwise identity 93.04
Mean single sequence MFE -20.84
Consensus MFE -17.48
Energy contribution -17.48
Covariance contribution 0.00
Combinations/Pair 1.08
Mean z-score -1.43
Structure conservation index 0.84
SVM decision value 0.44
SVM RNA-class probability 0.737009
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 11835124 115 + 23771897
UAAAUAAACCACUGCAAGUGCACUUAUCAUCGUAUGAUAAACAUGGAAUAUAUUUGCAUGUAUUUUAGUUGCUAUUUAAUUUCCGCACUUUAGUCCAGACCAUUAUUUAGCAUUG
(((((((....(((.((((((..(((((((...)))))))....((((.......(((...........)))........)))))))))).....)))....)))))))...... ( -19.96)
>DroSec_CAF1 12516 115 + 1
UAAAUAAACCACUGCAAGUCCACUUAUCAUCGUAUGAUAAACAUGGAAUAUAUUUGCAUAUAUUUUAGUUGCUAUUUAAUUUCCGCACUUUAGUACAGACCAUUAUUUAACAUUG
(((((((.....((((((((((.(((((((...)))))))...)))).....))))))..((((..(((.((............)))))..)))).......)))))))...... ( -16.60)
>DroSim_CAF1 11991 115 + 1
UAAAUAAACCACUGCAAGUGCACUUAUCAUCGUAUGAUAAACAUGGAAUAUAUUUGCAUAUAUUUUAGUUGCUAUUUAAUUUCCGCACUUUAGUACAGACCAUUAUUUAACAUUG
..........((((.((((((..(((((((...)))))))....((((.......(((...........)))........))))))))))))))..................... ( -20.06)
>DroEre_CAF1 11568 115 + 1
UAAAUAAACCACUGCAAGUGCACUUAUCAUCGUAUGAUAAACAUGGAAUAUAUUUGCAUGUAUUUAAGCUGCUAUUUAAUUUCCGCACUUUAGUAUAGAGCAAUAUUUAGCUUUG
..........((((.((((((..(((((((...)))))))....((((.......(((.((......)))))........)))))))))))))).((((((........)))))) ( -25.56)
>DroYak_CAF1 12511 112 + 1
UAAAUAAACCACUGCAAGUGCACUUAUCAACGUAUGAUAAACAUGGAAUAUAUUUGCAUGUGUUUUAGUUCCUAUUUAAUUUCCGCACUUUAGUAUAGACCAUUGUUUGGCU---
..........((((.((((((..((((((.....))))))(((((.((.....)).))))).......................))))))))))..((.(((.....)))))--- ( -22.00)
>consensus
UAAAUAAACCACUGCAAGUGCACUUAUCAUCGUAUGAUAAACAUGGAAUAUAUUUGCAUGUAUUUUAGUUGCUAUUUAAUUUCCGCACUUUAGUACAGACCAUUAUUUAGCAUUG
..........((((.((((((..((((((.....))))))...((((((((((....)))))))))).................))))))))))..................... (-17.48 = -17.48 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:13:32 2006