Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 11,832,970 – 11,833,070 |
Length | 100 |
Max. P | 0.943849 |
Location | 11,832,970 – 11,833,070 |
---|---|
Length | 100 |
Sequences | 6 |
Columns | 114 |
Reading direction | reverse |
Mean pairwise identity | 77.72 |
Mean single sequence MFE | -31.37 |
Consensus MFE | -18.70 |
Energy contribution | -20.20 |
Covariance contribution | 1.50 |
Combinations/Pair | 1.18 |
Mean z-score | -2.21 |
Structure conservation index | 0.60 |
SVM decision value | 1.34 |
SVM RNA-class probability | 0.943849 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 11832970 100 - 23771897 AAAUGCGAGGACCUACCACAGCCAUUGUGGCUAACGCCAAAGGCCAACAGUCUGCUGUCCUUCG---GGCCAAUCUCCUGGGCCAGCACUGAACGA-AAAA----------ACC ...(((((((..........(((....((((....))))..)))..((((....)))).))))(---(.(((......))).)).)))........-....----------... ( -29.50) >DroSec_CAF1 10365 101 - 1 AAAUGCGAGGCCCUAACAUAGCCAUUGUGGCUAACGCCAACGGCCAACAGUCUGCUGUCCUUCG---GGCCAACCUCCUGGGUCAGCACUGCAAAAAAAUA----------AUC ...((((.((((...(((.......)))(((....)))...)))).......(((((.(((..(---((....)))...))).))))).))))........----------... ( -31.70) >DroSim_CAF1 9724 101 - 1 AAAUGCGAGGCCCUAACAUAGCCAUUGUGGCUAACGCCAACGGCCAACAGUCUGCUGUCCUUCG---GGCCAAUCUCCUGGGCCAGCACUGCAAAAAAAUA----------AUC ...(((..(((((..............((((....))))..((((.((((....))))......---))))........))))).))).............----------... ( -32.50) >DroEre_CAF1 9414 111 - 1 AAAUGCUUGGUCCUAACACAGCCAUUGUGGCUAACGCCAACGGCCAACAGUCUGCAGUCCUUCG---GGCCAAUCUCCUGGGCCAGCACUAGAAAAAUAAACUCGAAAGCUGAA ...((((.(((((.......(((....((((....))))..)))............(.((....---)).)........)))))))))...............(....)..... ( -29.20) >DroYak_CAF1 10066 104 - 1 AAAUGCGAGGCCCUAACACAGCCAUUGUGGCUAACGCC-------AACAGUCUGCUGUCCUUCG---GGCCAAUCUCCUGGGCCAGCACUGGAAAAAAAACCACGGCAAUUGUA ...((((((((((....(((((.((((((((....)))-------.)))))..)))))((....---))..........))))).((..(((........)))..))..))))) ( -37.10) >DroAna_CAF1 9139 101 - 1 AAAUGCGAAACACUAACACAGCCAUUGUGGCUAACGCCGAGGGCCAAAAGUCUG---UCAUUCGAAAGACCAAUCGGCAGGGCUUGCACUGAGAGAAAUUU----------CUU ...(((((..(.((.....((((.....))))...(((((((((.....)))).---....((....))....))))))))..)))))..((((....)))----------).. ( -28.20) >consensus AAAUGCGAGGCCCUAACACAGCCAUUGUGGCUAACGCCAACGGCCAACAGUCUGCUGUCCUUCG___GGCCAAUCUCCUGGGCCAGCACUGAAAAAAAAAA__________AUC ...(((((((..........(((....((((....))))..)))..((((....)))).))))....((((.........)))).))).......................... (-18.70 = -20.20 + 1.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:13:30 2006