| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 11,832,612 – 11,832,724 |
| Length | 112 |
| Max. P | 0.606016 |
| Location | 11,832,612 – 11,832,724 |
|---|---|
| Length | 112 |
| Sequences | 6 |
| Columns | 116 |
| Reading direction | reverse |
| Mean pairwise identity | 80.92 |
| Mean single sequence MFE | -39.02 |
| Consensus MFE | -24.79 |
| Energy contribution | -25.49 |
| Covariance contribution | 0.70 |
| Combinations/Pair | 1.30 |
| Mean z-score | -1.62 |
| Structure conservation index | 0.64 |
| SVM decision value | 0.15 |
| SVM RNA-class probability | 0.606016 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 11832612 112 - 23771897 -UUGCACGCCUUCCAGGACUGCAACAUUUGAAUGUGGGGCUGUUGCCGGGGCAACCUCAGUACGGAAGGCAGAAAUUACGUGGCAGCCACAAGGCAAUUUUGUGGCGUGUGGA--- -(..((((((((((...((((...(((......))).(((....)))(((....)))))))..)))))))...............((((((((.....)))))))))))..).--- ( -44.30) >DroPse_CAF1 10186 106 - 1 CUCGG--ACCUUCU---GUUGCCGCAUUUGAAUG--GGUCUGAUGUUGGGGCAAGUCCAGCACGGAAGGGAGAAAUUACGUGGCAGCCACAAGGCAAAUUGUGGGCUUCCAGA--- ...((--(((....---((((((((.........--..((((.(((((((.....))))))))))).(..(....)..)))))))))(((((......)))))))..)))...--- ( -34.80) >DroSim_CAF1 9307 110 - 1 -UUGU--GCCCUUCAGGACUGCAACAUUUGAAUGUGGGACUGUUGCCGGGGCAACCUCAGUACGGAAGGCAGAAAUUACGUGGCAGCCACAAGGCAAUUUUGUGGCGUGUGGA--- -((.(--(((.(((...(((((((((.((........)).)))))).(((....))).)))...))))))).))......(.(((((((((((.....)))))))).))).).--- ( -34.90) >DroEre_CAF1 9076 108 - 1 -UUGU--GCCUUCCAGGACUGCAACAUUUGAAUGUGG--CUGUUGCCGGGGCAACCUCAGUACGGAAGGCAGAAAUUACGUGGCAGCCACAAGGCAAUUUUGUGGCGUGCGGA--- -((.(--(((((((...((((..((((....))))((--(....)))(((....)))))))..)))))))).))........(((((((((((.....)))))))).)))...--- ( -43.60) >DroYak_CAF1 9756 111 - 1 -UUGU--GCCUUCCAGAACUGCAGCAUUUGAAUGUGG--CUGUUGAAGGGGCAACCUCAGUGGGGAAGGCAGAAAUUACGUGGCAGCCACAAGGCAAUUUUGUGGCGUGUGGACAC -((.(--(((((((...((((((((((......)).)--))).....(((....)))))))..)))))))).)).....((.(((((((((((.....)))))))).))).).).. ( -41.70) >DroPer_CAF1 10193 106 - 1 CUCGG--ACCUUCU---GUUGCCGCAUUUGAAUG--GGUCUGAUGUUGGGGCAAGUCCAGCACGGAAGGGAGAAAUUACGUGGCAGCCACAAGGCAAAUUGUGGGCUUCCAGA--- ...((--(((....---((((((((.........--..((((.(((((((.....))))))))))).(..(....)..)))))))))(((((......)))))))..)))...--- ( -34.80) >consensus _UUGU__GCCUUCCAGGACUGCAACAUUUGAAUGUGGG_CUGUUGCCGGGGCAACCUCAGUACGGAAGGCAGAAAUUACGUGGCAGCCACAAGGCAAUUUUGUGGCGUGCGGA___ .......(((((((...(((((((((..............)))))).(((.....))))))..)))))))............(((((((((((.....)))))))).)))...... (-24.79 = -25.49 + 0.70)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:13:29 2006