Locus 4053

Sequence ID 3L_DroMel_CAF1
Location 11,805,638 – 11,805,730
Length 92
Max. P 0.987962
window6315

overview

Window 5

Location 11,805,638 – 11,805,730
Length 92
Sequences 6
Columns 106
Reading direction reverse
Mean pairwise identity 73.54
Mean single sequence MFE -28.27
Consensus MFE -21.37
Energy contribution -20.93
Covariance contribution -0.44
Combinations/Pair 1.37
Mean z-score -1.98
Structure conservation index 0.76
SVM decision value 2.10
SVM RNA-class probability 0.987962
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 11805638 92 - 23771897
UUCCUGGAAGUGGUUCAGUACCAGAUGGACAUUCUGGAAUAUUUCCGGGAGAGCGAGGUAAGCUAAACCAGGG----------ACAUAAACAU----AGGCUUCAA
.(((((((((((.(((((..((....)).....))))).)))))))))))((((..(((.......)))..(.----------.......)..----..))))... ( -25.40)
>DroSec_CAF1 3986 102 - 1
UUCCUGGAAGUGGUUCAGUACCAGAUGGACAUUCUGGAAUACUUCCGGGAGAGCGAGGUAAGCUAAACCGGGGCAUAAGCUAAACAUAAACAU----AGUCUUCAC
.(((((((((((.(((((..((....)).....))))).)))))))))))(((.(((((.......)))(.(((....)))...)........----..))))).. ( -29.10)
>DroSim_CAF1 4962 85 - 1
UUCCUGGAAGUGGUUCAGUACCAGAUGGACAUUCUGGAAUACUUCCGGGAGAGCGAGGUAAGC-----------------UAAACAUAAACAU----AGUCUUCAC
((((((((((((.(((((..((....)).....))))).))))))))))))...((((...((-----------------((..........)----))))))).. ( -26.90)
>DroEre_CAF1 7576 90 - 1
UUCCUGGAAGUGGUCCAGUACCAGAUGGACAUUUUGAAAUACUUCCGGGAAAGCGAGGUAUGU----CCGGGG----------ACAUCAACUCUAA--AACUGCAC
(((((((((((((((((........))))).........))))))))))))...(((..((((----(....)----------))))...)))...--........ ( -31.70)
>DroYak_CAF1 9806 92 - 1
UUCCUGGAAGUGGUUCAGUACCAGAUGGACAUCCUGGAAUACUUUCGGGAGAGCGAGGUAAGU----CCGGGG----------ACAUCUACUUGCACUAGCUGCAC
((((((((((((.(((((..((....)).....))))).))))))))))))(((.((((((((----..(...----------.)....)))))).)).))).... ( -31.60)
>DroAna_CAF1 3833 87 - 1
UUCUUCGAGGUGGUCCAGUACCAGAUGGACAUCCUGGAUAACUUCCGGGAGAGUGAGGUGAGU----UAGUGG-UUA------AGAUUAGC-CUAA--GAU-----
..(((((.....(((((........))))).(((((((.....)))))))...))))).....----....((-(((------....))))-)...--...----- ( -24.90)
>consensus
UUCCUGGAAGUGGUUCAGUACCAGAUGGACAUUCUGGAAUACUUCCGGGAGAGCGAGGUAAGC____CCGGGG__________ACAUAAACAU____AGACUUCAC
((((((((((((.(((((..((....)).....))))).))))))))))))....................................................... (-21.37 = -20.93 +  -0.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:13:26 2006