Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 11,799,013 – 11,799,132 |
Length | 119 |
Max. P | 0.820596 |
Location | 11,799,013 – 11,799,132 |
---|---|
Length | 119 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 72.83 |
Mean single sequence MFE | -41.84 |
Consensus MFE | -16.08 |
Energy contribution | -14.16 |
Covariance contribution | -1.92 |
Combinations/Pair | 1.40 |
Mean z-score | -1.90 |
Structure conservation index | 0.38 |
SVM decision value | 0.68 |
SVM RNA-class probability | 0.820596 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 11799013 119 + 23771897 UUGGACGGGGCAGAGAAAAUCUCUCGGCAAUCAAAGAGAGCCGCUCGCCGCUGGCCAGGAAGUUCAGAGCCAGAGCCACACACUUUUCGGUAGAAAUUGCUGGCUCUCUUUGA-GUCAGU ...(((...((.((((.....)))).))..((((((((((((((..((..(((((...(.....)...))))).))........((((....))))..)).))))))))))))-)))... ( -43.90) >DroPse_CAF1 12565 119 + 1 UCAGCCUUGGUACGGAAAACAAAUUCGAUAUGAUCGAUAUGCGCUCGCCACUGGCUAGAUAGUAGAGCGCCAAGGCAACGCAUUUGUCCAGGGAAAUUUCGAGCGAGCUUUUGCUUGCG- ....((((((.(((((........(((((...)))))..(((((((...((((......)))).))))((....))...)))))))))))))).........((((((....)))))).- ( -39.40) >DroSec_CAF1 8549 119 + 1 UUGGACGGGGCAGAGAAAAUCUCUCGGCAAUCAGAGAUAGCCGCUCGCCGCUAGCCAGGAAGUUCAGGGCCAGAGCCACACACUUCUCGGUAGAAAUUACUGGCUCUCUUUGA-GUCAGU .(((.((((((.((((.....))))(((.(((...))).))))).).))))))(((..(((((....(((....)))....)))))..))).......((((((((.....))-)))))) ( -44.00) >DroSim_CAF1 8144 119 + 1 UUGGACGGGGCAGAGAAAAUCUCUCGGCAAUCAGAGAUAGCCGCUCGCCGCUAGCCAGGAAGUUCAGGGCCAGAGCCACACACUUUUCGGUAGAAAUUGCUGGCUCUCUUUGA-GUCAGU .(((.((((((.((((.....))))(((.(((...))).))))).).))))))(((..(((((....(((....)))....)))))..))).......((((((((.....))-)))))) ( -42.50) >DroPer_CAF1 13082 119 + 1 UCAGCCUUGGUACGGAAAACAAAUUCGAUAUAAUCGAUAUGCGCUCGCCACUGGCUAGAUAGUAGAGCGCCAAGGCAACGCAUUUGUCCAGGGAAAUUUCGAGCGAGCUUUUGCUUGCG- ....((((((.(((((........(((((...)))))..(((((((...((((......)))).))))((....))...)))))))))))))).........((((((....)))))).- ( -39.40) >consensus UUGGACGGGGCAGAGAAAAUCUCUCGGCAAUCAGAGAUAGCCGCUCGCCGCUGGCCAGGAAGUUCAGCGCCAGAGCCACACACUUGUCGGUAGAAAUUGCUGGCUCUCUUUGA_GUCAGU ..(((.(((((.(((.....(((((..........)))))...))))))....(((((..........((....))..........((....)).....))))))))))........... (-16.08 = -14.16 + -1.92)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:13:19 2006