Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 1,191,666 – 1,191,782 |
Length | 116 |
Max. P | 0.805625 |
Location | 1,191,666 – 1,191,782 |
---|---|
Length | 116 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 94.92 |
Mean single sequence MFE | -35.35 |
Consensus MFE | -32.26 |
Energy contribution | -32.70 |
Covariance contribution | 0.44 |
Combinations/Pair | 1.09 |
Mean z-score | -1.73 |
Structure conservation index | 0.91 |
SVM decision value | 0.63 |
SVM RNA-class probability | 0.805625 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 1191666 116 + 23771897 AUGAGGCUCAUUUCUAAUGGGGCAUGGGGCAUUUCCACAUUCUUGUAA----CUAAUCACAGUUUGUGGUUGUGCUCUGAGAAUCGAAGAUUCCCUCGGGCGCCUGACAGUCUUCAUUAA ..((..(((.(..(....)..)...(((((((..(((((..((.((..----......))))..)))))..))))))))))..))(((((((...((((....)))).)))))))..... ( -37.00) >DroSec_CAF1 7311 116 + 1 AUGAGGCUCAUUUCUAAUGGGGCAUGGGGCAUUUCCACAUUCUUGUAA----CUAAUCACAGUUUGUGGUCGUGCUCUGAGAAUCGAAGAUUCCCUCGGGCGCCUGACAGUCUUUAUUAA ..((..(((.(..(....)..)...(((((((..(((((..((.((..----......))))..)))))..))))))))))..))(((((((...((((....)))).)))))))..... ( -33.60) >DroSim_CAF1 6695 116 + 1 AUGAGGCUCAUUUCUAAUGGGGCAUGGGGCAUUUCCACAUUCUUGUAA----CUAAUCACAGUUUGUGGUCGUGCUCUGAGAAUCGAAGAUUCCCUCGGGCGCCUGACAGUCUUCAUUAA ..((..(((.(..(....)..)...(((((((..(((((..((.((..----......))))..)))))..))))))))))..))(((((((...((((....)))).)))))))..... ( -36.20) >DroYak_CAF1 6723 117 + 1 AUGAGGCUCAUUUCUAAUGGGGCAUGGGA---UUCCACAUUCUUGUAACCAACUAAUCACAGUUUGUGGUCGUGCUCCGAGAAUCGAAGAUUCCCUCAGGCGCCUGACAGUCUUCAUUAA ..((..(((((.....))(((((((((..---..(((((..((.((............))))..)))))))))))))))))..))(((((((...((((....)))).)))))))..... ( -34.60) >consensus AUGAGGCUCAUUUCUAAUGGGGCAUGGGGCAUUUCCACAUUCUUGUAA____CUAAUCACAGUUUGUGGUCGUGCUCUGAGAAUCGAAGAUUCCCUCGGGCGCCUGACAGUCUUCAUUAA ..((..(((.(..(....)..)...(((((((..(((((..((.((............))))..)))))..))))))))))..))(((((((...((((....)))).)))))))..... (-32.26 = -32.70 + 0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:41:02 2006