Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 11,797,128 – 11,797,246 |
Length | 118 |
Max. P | 0.587040 |
Location | 11,797,128 – 11,797,246 |
---|---|
Length | 118 |
Sequences | 5 |
Columns | 118 |
Reading direction | reverse |
Mean pairwise identity | 87.29 |
Mean single sequence MFE | -31.80 |
Consensus MFE | -25.68 |
Energy contribution | -25.80 |
Covariance contribution | 0.12 |
Combinations/Pair | 1.04 |
Mean z-score | -1.49 |
Structure conservation index | 0.81 |
SVM decision value | 0.11 |
SVM RNA-class probability | 0.587040 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 11797128 118 - 23771897 CUGCAGUUCCACCGUCUCGAGGAAGCCGCGCUUCUUCUUCGCCGAAGCCUCCAGGAGUCCAUUGACGCCCUCAUACAGCGUAUCACGCGAAACCUUCGACCUGCAAGAUUGAACCAAU .(((((.((.........((((((((...))))))))(((((.((..((....))..)).....((((.........)))).....)))))......)).)))))............. ( -30.20) >DroPse_CAF1 10698 118 - 1 UUGCAACUCCACCGUCUCGAGGAAGCCACGCUUCUUCUUCAGCGAGUUCUCCAGAAUUCCACUGACGCCCUCAUAGAGCGUGUCACGCGAAACUUUCGAUCUGAAACACAAAGUAAAU ((((.........((.((((((((((...))))))))....((((((((....))))))...((((((.(((...))).)))))).)))).))((((.....))))......)))).. ( -29.90) >DroSec_CAF1 6666 118 - 1 CUGCAGUUCCACCGUCUCGAGGAAGCCGCGCUUCUUCUUGGCCGAAGCCUCCAGGAGUCCAUUGACGCCCUCAUACAGCGUAUCACGCGAAACCUUCGACCUGCAAGAUUCAACCAAU .(((((.......(((..((((((((...))))))))..)))(((((.....(((.(((....)))..)))......(((.....))).....)))))..)))))............. ( -33.00) >DroSim_CAF1 6262 118 - 1 CUGCAGUUCCACCGUCUCGAGGAAGCCGCGCUUCUUCUUGGCCGAAGCCUCCAGGAGUCCAUUGACGCCCUCAUACAGCGUAUCACGCGAAACCUUCGACCUGCAAGAUUCAACCAAU .(((((.......(((..((((((((...))))))))..)))(((((.....(((.(((....)))..)))......(((.....))).....)))))..)))))............. ( -33.00) >DroPer_CAF1 11215 118 - 1 UUGCAACUCCACCGUCUCGAGGAAGCCACGCUUCUUCUUCAGCGAGUUCUCCAGAAUUCCACUGACGCCCUCAUAGAGCGUGUCACGCGAAACUUUCGAUCUGCAACACAAAGUAAAU (((((..((....((.((((((((((...))))))))....((((((((....))))))...((((((.(((...))).)))))).)))).))....))..)))))............ ( -32.90) >consensus CUGCAGUUCCACCGUCUCGAGGAAGCCGCGCUUCUUCUUCGCCGAAGCCUCCAGGAGUCCAUUGACGCCCUCAUACAGCGUAUCACGCGAAACCUUCGACCUGCAAGAUUAAACCAAU .(((((.((...((((..((((((((...))))))))......((..((....))..))....))))..........(((.....))).........)).)))))............. (-25.68 = -25.80 + 0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:13:15 2006