| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 11,796,136 – 11,796,256 |
| Length | 120 |
| Max. P | 0.848049 |
| Location | 11,796,136 – 11,796,256 |
|---|---|
| Length | 120 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 82.80 |
| Mean single sequence MFE | -23.69 |
| Consensus MFE | -20.14 |
| Energy contribution | -20.03 |
| Covariance contribution | -0.11 |
| Combinations/Pair | 1.08 |
| Mean z-score | -1.79 |
| Structure conservation index | 0.85 |
| SVM decision value | 0.78 |
| SVM RNA-class probability | 0.848049 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 11796136 120 + 23771897 AAGUGCAAAUUUUAAUCAAGUGCAAAUUUUAAUACCAAUAUUCUCGGCUACAAACAAAGCCGCAGUUCCAGGGCUGGUAAACUAAUAGUGAUAAAAACCAGUUGGCAGCCCACAAAGCAU ...................((((...................(((((((........))))).)).....((((((.(((.((....((.......)).))))).)))))).....)))) ( -24.70) >DroSec_CAF1 5438 98 + 1 AAGUGCA-----------------AAUUUUAAUGCCAAUAUUCUCGGCUACAAACAAAGCCGCAGUUCCAGGGCU-----ACUAAUAGUAAUAAGAACCGGUUGGCAGUCCACAAAGUAU ..((((.-----------------........(((((((.....(((((........)))))(.((((....(((-----(....)))).....)))).)))))))).........)))) ( -22.27) >DroSim_CAF1 5046 103 + 1 AAGUGCA-----------------AAUUUUAAUACCAAUAUUCUCGGCUACAAACAAAGCCGCAGUUCCAGGGCUGGUAUACUAAUAGUAAUUAGAACCAGUUGGCAGUCCACAAAGCAU ..((((.-----------------..................(((((((........))))).)).....((((((.....(((((....)))))..((....)))))))).....)))) ( -24.10) >consensus AAGUGCA_________________AAUUUUAAUACCAAUAUUCUCGGCUACAAACAAAGCCGCAGUUCCAGGGCUGGUA_ACUAAUAGUAAUAAGAACCAGUUGGCAGUCCACAAAGCAU ..((((....................................(((((((........))))).)).....((((((.....(((((.((.......))..))))))))))).....)))) (-20.14 = -20.03 + -0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:13:14 2006