Locus 4044

Sequence ID 3L_DroMel_CAF1
Location 11,790,276 – 11,790,383
Length 107
Max. P 0.896543
window6293

overview

Window 3

Location 11,790,276 – 11,790,383
Length 107
Sequences 4
Columns 107
Reading direction forward
Mean pairwise identity 95.33
Mean single sequence MFE -36.10
Consensus MFE -33.94
Energy contribution -33.88
Covariance contribution -0.06
Combinations/Pair 1.10
Mean z-score -1.87
Structure conservation index 0.94
SVM decision value 0.99
SVM RNA-class probability 0.896543
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 11790276 107 + 23771897
CGCUCCUUGUACAUAAUGAGCCACACGGCUCGCUACAAAUUCACACACGAGAUACUAGCUAAGGAGCACUCCCAGUUUCAGGGUGCGCUGGUGCCCAGGACACGUCG
.((((((((........(((((....)))))((((....(((......)))....)))))))))))).......((.((.(((..(....)..)))..)).)).... ( -36.00)
>DroSec_CAF1 10145 107 + 1
CGCUCCUUGUACAUAAUGAGCCACACGGCUCGCUACAAAUUCACGCACGAGAUACUAGCUAAGGAGCAGUCCCAGUUUCAGGGUACGCUGGUGCCCAGGACACGUCG
.((((((((........(((((....)))))((((....(((......)))....)))))))))))).((((........((((((....)))))).))))...... ( -38.00)
>DroSim_CAF1 10145 107 + 1
CGCUCCUUGUACAUAAUGAGCCACACGGCUCGCUACAAAUUCACGCACGAGAUACUAGCUAAGGAGCACUCCCAGUUUCAGGGUACGCUGGUGCCCAGGACACGUCG
.((((((((........(((((....)))))((((....(((......)))....)))))))))))).......((.((.((((((....))))))..)).)).... ( -36.80)
>DroYak_CAF1 9982 107 + 1
CGCUCCUUGUACAUAAUGAGCCACACGGCUCGCUACAACUUCACGCACGAGAUACUAUCCAAGGAGCACUCCCAGUUUCGGGGUACGCUGGUGCCAAAGACGCGUCG
.((((((((........(((((....)))))((...........)).............)))))))).......((.((..(((((....)))))...)).)).... ( -33.60)
>consensus
CGCUCCUUGUACAUAAUGAGCCACACGGCUCGCUACAAAUUCACGCACGAGAUACUAGCUAAGGAGCACUCCCAGUUUCAGGGUACGCUGGUGCCCAGGACACGUCG
.((((((((........(((((....)))))((((....(((......)))....)))))))))))).......((((..((((((....)))))).))))...... (-33.94 = -33.88 +  -0.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:13:05 2006