Locus 4043

Sequence ID 3L_DroMel_CAF1
Location 11,788,672 – 11,788,788
Length 116
Max. P 0.894196
window6292

overview

Window 2

Location 11,788,672 – 11,788,788
Length 116
Sequences 3
Columns 119
Reading direction forward
Mean pairwise identity 89.27
Mean single sequence MFE -28.97
Consensus MFE -25.16
Energy contribution -25.83
Covariance contribution 0.67
Combinations/Pair 1.08
Mean z-score -2.40
Structure conservation index 0.87
SVM decision value 0.98
SVM RNA-class probability 0.894196
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 11788672 116 + 23771897
AUUUCAGAUCAUAUUUAUGUAUAACUGCUACUCGA---GUAGCGAAGGGGUGUAACAGAUUGGUAAAAUAUUAUAAUAUUUGCAGACCCCAUAGGGUAUAGAUCUAUUUAUGAUUAGAU
...((.(((((((...((.((((.(((((((....---)))))...(((((.(..(((((..((((....))))...))))).).)))))...)).)))).)).....))))))).)). ( -28.60)
>DroSec_CAF1 8679 116 + 1
AUUUCAGAUCAUAUUUAUGUAUAACCGCUACUCGA---GUAGCUGAGGGGUGUAACAGAUUUGUUGAAUAUUAUUAAAUUUGCUGACCUCAUAAGGUAUAGAUUUAUUUGUGAUUAGAU
...((.(((((((...((.((((.(((((((....---)))))...(((((.((.((((((((...........)))))))).)))))))....)))))).)).....))))))).)). ( -29.20)
>DroSim_CAF1 8684 119 + 1
AUUUCAGAUCAUAUUUAUGCAUAACCGCUACUGUAGUAGUAGCUGAGGGGUGUAACAGAUUUGUUGAAUAUUAUUAAAUUUGCUGACCUCAUAAGGUAUAGAUUUAUUUGUGAUUAGAU
...((.(((((((..((....((((((((((((...)))))))...(((((.((.((((((((...........)))))))).)))))))....))).))....))..))))))).)). ( -29.10)
>consensus
AUUUCAGAUCAUAUUUAUGUAUAACCGCUACUCGA___GUAGCUGAGGGGUGUAACAGAUUUGUUGAAUAUUAUUAAAUUUGCUGACCUCAUAAGGUAUAGAUUUAUUUGUGAUUAGAU
...((.(((((((..((....((((((((((.......)))))...(((((.((.((((((((...........)))))))).)))))))....))).))....))..))))))).)). (-25.16 = -25.83 +   0.67)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:13:04 2006