Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 11,783,486 – 11,783,603 |
Length | 117 |
Max. P | 0.573801 |
Location | 11,783,486 – 11,783,603 |
---|---|
Length | 117 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 78.98 |
Mean single sequence MFE | -36.05 |
Consensus MFE | -21.66 |
Energy contribution | -21.72 |
Covariance contribution | 0.06 |
Combinations/Pair | 1.23 |
Mean z-score | -1.54 |
Structure conservation index | 0.60 |
SVM decision value | 0.08 |
SVM RNA-class probability | 0.573801 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 11783486 117 + 23771897 CGACAAGGGACACAUAGUCAUUGAGACAGAUGGAGGA---AAAUUUCUCGACUGACAGGUGGGAGAAUAUGAGCUGUAAGUGAUUCUUACGCCCACCAGCUCGAAUAUCCCAUUCGCAGU ...(((..(((.....))).))).........(((((---....))))).((((.(..((((((..((.(((((((...(((.......)))....))))))).)).))))))..))))) ( -33.20) >DroSec_CAF1 3637 117 + 1 CGAUAAGGGACACAUAGUCAUUGUCACAAAUGGAGGA---AAAUUCCUCGACUGACAGGUGGGAGAAUAUGAGCUGUAAAUGAUUCUUACGCCCACCAGCUCGAAUAUCCCAUUCGCAGU .(((((..(((.....))).))))).......(((((---....))))).((((.(..((((((..((.(((((((....................))))))).)).))))))..))))) ( -36.55) >DroSim_CAF1 3625 117 + 1 CGAUAAGGGACACAUAGUCAUUGUCGCAAAUGGAGGA---AAAUUCCUCGACUGACAGGUGGGAGAAUAUGAGCUGUAAAUGAUUCUUACGCCCACCAGCUCGAAUAUCCCAUUCGCAGU ((((((..(((.....))).))))))......(((((---....))))).((((.(..((((((..((.(((((((....................))))))).)).))))))..))))) ( -37.35) >DroEre_CAF1 3751 117 + 1 CUAUAACGGACACGUAGUCAUGGCUGCAGCUGGAGAA---AAAUCGCUCCACUGACAAGUGGGAGAAUAUGAGCUGCAAGUGAUUCUUCCGCCCACCAGCUCGAAUAUCCCAUUCGCAGU .............(((((....)))))....((((..---......))))((((.(.(((((((..((.(((((((...(((.......)))....))))))).)).))))))).))))) ( -36.40) >DroYak_CAF1 3647 117 + 1 CUAUAACGGACACGUAGUCAUGGGGACAGCCUUCGAA---AAAUUGCUCCACUGACAGGUGGGAGAAUACGAGCUCCAGGUGAUUCUUCCGUCCACCAGCUCGAAUAUCCCACUCGCAGU .....(((....))).(((((((((.(((........---...)))))))).)))).(((((((..((.((((((...((((...........)))))))))).)).)))))))...... ( -36.60) >DroMoj_CAF1 7910 120 + 1 CGCCCAGCAGCACAUAGUCGAAGUCGCAGCUAUUCGGACCCAGUUGCUCGACGGCCAAGUGGGAGAAGGCCAACUGGAUGUGAUUACUUCUACCUCCGGCCCGUAUGUCCCACUCGCAGU ......((.((.....(((((....((((((..........))))))))))).))..(((((((.(.((((....(((.((((.....)).)).)))))))....).))))))).))... ( -36.20) >consensus CGAUAAGGGACACAUAGUCAUUGUCACAGAUGGAGGA___AAAUUGCUCGACUGACAGGUGGGAGAAUAUGAGCUGUAAGUGAUUCUUACGCCCACCAGCUCGAAUAUCCCAUUCGCAGU ........(((.....)))...............................((((.(.(((((((.....(((((((....................)))))))....))))))).))))) (-21.66 = -21.72 + 0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:13:02 2006