Locus 4040

Sequence ID 3L_DroMel_CAF1
Location 11,783,070 – 11,783,172
Length 102
Max. P 0.774614
window6289

overview

Window 9

Location 11,783,070 – 11,783,172
Length 102
Sequences 6
Columns 102
Reading direction reverse
Mean pairwise identity 79.02
Mean single sequence MFE -34.20
Consensus MFE -18.72
Energy contribution -19.77
Covariance contribution 1.05
Combinations/Pair 1.32
Mean z-score -2.07
Structure conservation index 0.55
SVM decision value 0.54
SVM RNA-class probability 0.774614
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 11783070 102 - 23771897
CGCGAUGCGGAAUCUAGUCUCUCCGUAUCCGCACCCAGUGGAUACAACUCCUCAGUGGUACUGUUUCGAAGUUGUCACGAGGAGACGCAGACACAAACCUUU
.(((....(((..........)))((((((((.....))))))))..((((((.(((..(((.......)).)..))))))))).))).............. ( -33.20)
>DroGri_CAF1 7307 90 - 1
AGCCAGGAUG------GCCUUACUGUU-CU--GCCAGGUGG---CAAUUCAUCGCACGUUUUGUUCCGCAGCUGCCAGGUGGAGACCAAUGUGCAAACGCUG
(((..((((.------(((...(((..-..--..)))..))---).))))...(((((((...((((((.........))))))...)))))))....))). ( -29.20)
>DroSec_CAF1 3221 102 - 1
CGCGAUGCGGAAUCUAGUCUCUCCGUAUCCGCACCCAGUGGAUACAACUCCUCAGUGGUACUGUUCCGAAGUUGUCACGAGGAGACGCAGACGCAAACCUUU
.(((.((((...............((((((((.....))))))))..((((((.(((..(((.......)).)..))))))))).))))..)))........ ( -38.20)
>DroSim_CAF1 3209 102 - 1
CGCGAUGCGGAAUCUAGUCUCUCCGUGUCCGCACCCAGUGGAUACAACUCCUCAGUCGUACUGUUCCGAAGUUGUCACGAGGAGACGCAGACGCAAACCUUU
.(((.((((...............((((((((.....))))))))..((((((.((...(((.......)))....)))))))).))))..)))........ ( -34.30)
>DroEre_CAF1 3335 102 - 1
CGCGAUGCGGAGUCUAGCCUCUCCAUAUCUGCACCCAGUGGAUUCAACUCCUCAGUGGUACUGUUUCGAACUUGCCACGAGGAGACGCAGACGCAAAACUUU
.(((....((((........))))...(((((.((....))......((((((.((((((..((.....)).))))))))))))..))))))))........ ( -36.70)
>DroYak_CAF1 3231 102 - 1
CACGAUGCAGAAUCUAGCCUCUCCGUAUCCGCACCCAGUGGCUUCAACUCCUCAGUGGAAUUGUAUCGAAGUUGUCACGAGGAGACGGAGACGCAAACCUUU
...(((.....)))..((.(((((((..((((.....))))......((((((.((((((((.......)))).))))))))))))))))).))........ ( -33.60)
>consensus
CGCGAUGCGGAAUCUAGCCUCUCCGUAUCCGCACCCAGUGGAUACAACUCCUCAGUGGUACUGUUCCGAAGUUGUCACGAGGAGACGCAGACGCAAACCUUU
................((.(((.(((((((((.....))))))....((((((.((((((((.......)).))))))))))))))).))).))........ (-18.72 = -19.77 +   1.05)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:13:01 2006