Locus 404

Sequence ID 3L_DroMel_CAF1
Location 1,186,001 – 1,186,121
Length 120
Max. P 0.729947
window590

overview

Window 0

Location 1,186,001 – 1,186,121
Length 120
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 80.28
Mean single sequence MFE -43.47
Consensus MFE -27.13
Energy contribution -26.13
Covariance contribution -0.99
Combinations/Pair 1.34
Mean z-score -1.82
Structure conservation index 0.62
SVM decision value 0.42
SVM RNA-class probability 0.729947
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 1186001 120 - 23771897
AGGAGCAGGAAAGAUCUUUGCAGUUGGACCGGGAGCAGGUCCGUGGCCCAUUCGUCACUCCAAUUGCGAGGGGAUCUUUAAUUUCUCGCUAAACGAAGAGGAUGAACUCACUCAAGGAAG
..(((..(((((((((((((((((((((...(((.....)))(((((......))))))))))))))))..))))))))...(((((..........)))))....))..)))....... ( -37.60)
>DroSec_CAF1 1662 120 - 1
AGGAGCAGGAAAGAUCUUUGCAGUUGGACCGGGAGCAGGUCCCUGGCCCAUUCGCCACUCCAAUUGCGAGGGCAUCUUUAAUUUCUCGCUAAGCGAAACGGAUGAACUCACCCAAGGAAG
.........(((((((((((((((((((..((((.....))))((((......)))).)))))))))))))..))))))..((((((((...))))...((.((....)).))..)))). ( -38.10)
>DroAna_CAF1 11171 120 - 1
GGGGCCAGGAAAGAUCUUUGCUGUAGGAGCAGGAGCAGGUCCUUGGCCCAUUCGUGGCUCCAACUGCGAGGGCAUCUUCAACCUGGCCGUGAGCGAAGAAGACAAGCUGACAAAUGGCAG
..(((((((.(((((((((((.((.((((((.(((..(((.....)))..))).).))))).)).))))))..)))))...)))))))((.(((...........))).))......... ( -47.90)
>DroEre_CAF1 2573 120 - 1
GGGAGCGGGCAAGAUCUUUGCAGUUGGACCGGGAGCAGGUCCCUGGCCCAUUCGCCACUCCAACUGCGAAGGCAUCUUCAACUUCUCGCUCAACGCAGAGGACGAACUCACCCAAGGAAG
(((((((((.((((((((((((((((((..((((.....))))((((......)))).)))))))))))))..)))))......)))))))......(((......)))..))....... ( -48.00)
>DroWil_CAF1 4251 120 - 1
AGGACCAGGGAAAAUCUUUGCCAUUGGUGCUGGUGCCGGACCCUGGCCCAUACGCAACUCCAAUUGUGAGGGUAUCUACAAUCUGUCAGUAAGUGAAGAUGAUAUCCUAACCAAUGGUAG
..................((((((((((..(((.(((((...))))))))..(((((......)))))((((((((....((((.(((.....))))))))))))))).)))))))))). ( -38.70)
>DroYak_CAF1 1041 120 - 1
AGGAGCGGGAAAGAUCUUUGCAGUUGGACCGGGAGCAGGUCCGUGGCCCAUUCGCCACUCCAACUGCGAGGGGAUCUUCAAUUUCUCGCUCAACGAGGAGGAUGAACUCACCCAAGGCAG
..((((((((((((((((((((((((((...(((.....)))(((((......))))))))))))))))..)))))).....)))))))))...(..(((......)))..)........ ( -50.50)
>consensus
AGGAGCAGGAAAGAUCUUUGCAGUUGGACCGGGAGCAGGUCCCUGGCCCAUUCGCCACUCCAACUGCGAGGGCAUCUUCAAUUUCUCGCUAAACGAAGAGGAUGAACUCACCCAAGGAAG
..(((.(((.((((((((((((((((((..(((((..(((.....)))..))).))..)))))))))))))..)))))...))))))................................. (-27.13 = -26.13 +  -0.99)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:41:01 2006