Locus 4037

Sequence ID 3L_DroMel_CAF1
Location 11,778,050 – 11,778,170
Length 120
Max. P 0.715220
window6286

overview

Window 6

Location 11,778,050 – 11,778,170
Length 120
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 84.50
Mean single sequence MFE -38.21
Consensus MFE -23.88
Energy contribution -23.80
Covariance contribution -0.08
Combinations/Pair 1.10
Mean z-score -2.21
Structure conservation index 0.62
SVM decision value 0.39
SVM RNA-class probability 0.715220
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 11778050 120 - 23771897
UGUCUCUCCAUUGUCGCGUUGGUUCGAAAUGCAAUACCAACUAAUACAAUGCGGUGGCAACUACAGCACAUCCUUUACUCUGCGCCCGCCGCAAAACGAGGAUUCUAGUGUAUAUGCCCA
((((.((.((((((...((((((............))))))....)))))).)).))))......((((((((((.....((((.....))))....))))))....))))......... ( -29.60)
>DroSec_CAF1 13753 120 - 1
UGUAUCUCAACUGUCGCGUUGGUUCGAGAUGCAAUACCAACUGAUACAAUGCGGUGGGAACUACAGCAAAUCCUUUACUCUGCGCCCGCCGCAGAAUGAGGAUUCUGGUGAAUAUGCCCA
(((((((((((((......))))).))))))))......((((........))))(((.....((.(((((((((...((((((.....))))))..))))))).)).))......))). ( -38.90)
>DroSim_CAF1 12951 120 - 1
UGUAUCUCAACUGUCGCGUUGGUUCGAGAUGCAAUACCAACUAAUACAAUGCGGUGGGAACUACAGCAAAUCCUUUACUCUGCGCCCGCCGCAGAAUGAGGAUUCUGGUGUAUAUGCCCA
(((((((((((((......))))).))))))))..(((..............)))(((...((((.(((((((((...((((((.....))))))..))))))).)).))))....))). ( -40.74)
>DroEre_CAF1 14284 120 - 1
UGUCUCUCCAAUUACGCGCUGGUUCACCCUGCAAUACCAACUGAUUCAAUGCGGUGGCAAUUACAGCACAUCCUUCACUCUGCAGCCGCUGCAGGAUGAAGACUCCGGUGCUUAUGCCCA
..............((((.((..(((...((......))..)))..)).))))(.((((.....(((((...(((((..((((((...))))))..)))))......)))))..))))). ( -33.90)
>DroYak_CAF1 13741 120 - 1
UAUCUCUACACUGACGCGUUGGUUCGAGCUGCAGUACCAACUCAUUCAAUGCGGUGGCAAUCACAGCAAACCAUUUACUUUGCGGCCGCCGCAGGAUGAGGAUGCUGCUGCAUAUGCUCA
.........((..(....)..))..(((((((((((.((.(((((((..(((((((((.......(((((........))))).))))))))))))))))..)).)))))))...)))). ( -47.90)
>consensus
UGUCUCUCCACUGUCGCGUUGGUUCGAGAUGCAAUACCAACUAAUACAAUGCGGUGGCAACUACAGCAAAUCCUUUACUCUGCGCCCGCCGCAGAAUGAGGAUUCUGGUGCAUAUGCCCA
...............((((((((............))))))........(((((((((.......(((............))).)))))))))......................))... (-23.88 = -23.80 +  -0.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:12:58 2006