Locus 4036

Sequence ID 3L_DroMel_CAF1
Location 11,777,538 – 11,777,658
Length 120
Max. P 0.611115
window6285

overview

Window 5

Location 11,777,538 – 11,777,658
Length 120
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 89.51
Mean single sequence MFE -42.12
Consensus MFE -32.63
Energy contribution -33.43
Covariance contribution 0.80
Combinations/Pair 1.09
Mean z-score -1.54
Structure conservation index 0.77
SVM decision value 0.16
SVM RNA-class probability 0.611115
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 11777538 120 - 23771897
CGCCAGAUUAUCGCAUUUCUUUGGAGGUGCGCAAGCUGCAGCUUGCAGACGAUGUCGUCUGCCGUACCUGCAGCUAUUUGGAAAUCCACGACAGUAAAGAUGUCGAAGGCCAGAAUCUUG
.(((.((((.(((((((((....)))))))...((((((((...(((((((....))))))).....))))))))....)).))))..(((((.......)))))..))).......... ( -47.50)
>DroSec_CAF1 13253 117 - 1
CGCCGGAUUACCGCAUUUCUCUGGAGGUGCGCAAGCUGCAGCU---AAACGAUAUCGUCUGCCGUACCUGCAGCUACUUGGAAAUCCACGACAGCAAUGAGGUCGAAGGCCAGAAUCUUG
.((((((((.(((((((((....)))))))...((((((((.(---(.(((....)))......)).))))))))....)).))))).((((.........))))..))).......... ( -40.40)
>DroSim_CAF1 12442 117 - 1
CGCCAGAUUACCGCAUUUCUCUGGAGGUGCGCAAGCUGCAGCU---AAACGAUAUCGUCUGCCGUACCUGCAGCUACUUGGAAAUCCACGACAGCAAAGAUGUCGAAGGCCAGAAUCUUG
.(((.((((.(((((((((....)))))))...((((((((.(---(.(((....)))......)).))))))))....)).))))..(((((.......)))))..))).......... ( -38.40)
>DroEre_CAF1 13775 117 - 1
CGCCAGAUUACCGCAUUUCUCUGGAGGUGCGCAAACUGCAGCU---AAACGACGUCGUCUGCCGCACCUGCAGCUACUUGGAAGUCCAGGACGGCGAAGGUGUCGACGGCCAGAGUCUUG
.(((((.....((((((((....))))))))....)))..)).---....(((((((((....((((((...(((.(((((....)))))..)))..)))))).))))))....)))... ( -40.40)
>DroYak_CAF1 13232 117 - 1
CGCCGGAUUACCGCAUUUCUCUGGAGGUGCGCAAGCUGCAGCU---AAACGAUGUCGCCUGCCGUAGGUGCAGCUACUUGGAAAUCCACGACAGCGAACUGGUCGAGGGCGAGAGUCUUG
(((((((((.(((((((((....)))))))...(((((((.((---(..((........))...))).)))))))....)).))))).((((((....)).))))..))))......... ( -43.90)
>consensus
CGCCAGAUUACCGCAUUUCUCUGGAGGUGCGCAAGCUGCAGCU___AAACGAUGUCGUCUGCCGUACCUGCAGCUACUUGGAAAUCCACGACAGCAAAGAUGUCGAAGGCCAGAAUCUUG
.(((.((((.(((((((((....)))))))...((((((((.......(((....))).........))))))))....)).))))..(((((.......)))))..))).......... (-32.63 = -33.43 +   0.80)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:12:57 2006