| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 11,776,418 – 11,776,538 |
| Length | 120 |
| Max. P | 0.566581 |
| Location | 11,776,418 – 11,776,538 |
|---|---|
| Length | 120 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 91.17 |
| Mean single sequence MFE | -38.88 |
| Consensus MFE | -31.88 |
| Energy contribution | -30.68 |
| Covariance contribution | -1.20 |
| Combinations/Pair | 1.21 |
| Mean z-score | -1.34 |
| Structure conservation index | 0.82 |
| SVM decision value | 0.07 |
| SVM RNA-class probability | 0.566581 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 11776418 120 + 23771897 GGCUAGAUCACCACCACAUCCGCCAGGAAACUGGUUGCUGGUGGAAAAGUAGAAGAACUUGAGGGACGAUACUUGACGGCUUUCGAGACGCAGCUCGUUGGUAGAUGUAAUCAUAGCUUU ((((((((..((((((((...(((((....))))))).))))))..(((((...(..(.....)..)..)))))....(((..((((......))))..))).......))).))))).. ( -36.50) >DroSec_CAF1 12162 120 + 1 GGCUAGAUCACCACCACAUCCACCAGGAAACUGGUUGCUGGUGGAAAAGUAGAAGAACUUGAGGGACGAUACUCGACGGCUUUCGAGACGCAGCUCGUUGGUAGAUGUAAUCAAAGCUUU ((((......((((((((...(((((....))))))).))))))..............((((...(((.(((.((((((((..((...)).))).))))))))..)))..)))))))).. ( -37.90) >DroSim_CAF1 11366 120 + 1 GACUAGAUCACCGCCACAUCCACCAGGAAACUGGUUGCUGGUGGAAAAGUAGAAGAACUUGAGGGACGAUACUCGACGGCUUUCGAGACGCAGCUCGUUGGUAGAUGUAAUCAAAGCUUU ((.((.(((((((((...((((((((.((.....)).)))))))).............(((((........))))).)))...((((......))))..))).))).)).))........ ( -36.40) >DroEre_CAF1 12191 120 + 1 CGCUAGAUCACCACCACAACCGCUGGGAAAUUGGUUGCUGGUGGAAAAGUAGAACAACCUGAGGGAGGACACUCCACGGCUUUCGAGCCGCAGCUCGUUGGUGGAUGUAAUCCUCGCUUU .((.......((((((((((((.(.....).)))))).))))))................(((((...(((.(((((.(....(((((....))))).).))))))))..)))))))... ( -42.20) >DroYak_CAF1 12147 120 + 1 AGCUAGAUCACCACCACAUCCGCUGGGAAACUGGUUGCUGGUGGAGUAGUAGAACAACUUGAGGGAGGAUACUCUACGGCUUUCGAGCCGCAGCUCGUUGGUAGAUGUAAUCCUAGCUUU ((((((....((((((((...((..(....)..)))).))))))..........((((..(((((((....)))).(((((....)))))...)))))))............)))))).. ( -41.40) >consensus GGCUAGAUCACCACCACAUCCGCCAGGAAACUGGUUGCUGGUGGAAAAGUAGAAGAACUUGAGGGACGAUACUCGACGGCUUUCGAGACGCAGCUCGUUGGUAGAUGUAAUCAUAGCUUU ...((.(((.((((((((...(((((....))))))).))))))................(((........)))....(((..((((......))))..))).))).))........... (-31.88 = -30.68 + -1.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:12:56 2006