Locus 4031

Sequence ID 3L_DroMel_CAF1
Location 11,768,238 – 11,768,348
Length 110
Max. P 0.530249
window6278

overview

Window 8

Location 11,768,238 – 11,768,348
Length 110
Sequences 5
Columns 110
Reading direction forward
Mean pairwise identity 79.91
Mean single sequence MFE -25.38
Consensus MFE -16.68
Energy contribution -18.04
Covariance contribution 1.36
Combinations/Pair 1.19
Mean z-score -1.57
Structure conservation index 0.66
SVM decision value -0.01
SVM RNA-class probability 0.530249
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 11768238 110 + 23771897
ACUUAAACUGAAGUCUCUAAAUACCUUGUAGUGCAUUGCUAACGCUUCAAUAUAAUCCACAGAAACUUCGGACUGCUUUCUUUUGGCGAAGAAGCCGAAGGUGACGAGGA
.(((...(((((((.(((.......(((((.((....((....))..)).))))).....))).)))))))........((((((((......))))))))....))).. ( -25.90)
>DroSec_CAF1 4013 94 + 1
A------CUGAAGUCUCUA-AUAC---------CAUUGCUAACGCUUCAAUAUAAUCAACAGAAACUUCGGCCUGCUAUCUUUUGGCGAAGAAGCCGAAGGUGACGAGGA
.------(((((((.(((.-....---------....((....))...............))).)))))))(((.....((((((((......)))))))).....))). ( -23.55)
>DroSim_CAF1 3248 94 + 1
A------CUGAAGUCUCUA-AUAC---------CAUUGCUAACGCUUCAAUAUAAUCAACAGAAACUUCGGCCUGCUAUCUUUUGGCGAAGAAGCCGAAGGUGACGAGGA
.------(((((((.(((.-....---------....((....))...............))).)))))))(((.....((((((((......)))))))).....))). ( -23.55)
>DroEre_CAF1 4189 109 + 1
AUUUAGACUAAA-CCACUAAAUACCUCGUAGUGCAUUGCUAACGCUUCAAUAUAAUCCACAGAAACUUUGGCCUGCUCUCCUUUGGCGAAGAAGCCGAAGGUGAUGAGGA
((((((......-...)))))).((((((((.((...((....))..............((((...))))))))))((.((((((((......)))))))).)).)))). ( -32.20)
>DroYak_CAF1 4177 85 + 1
AUU-AGA------------------------UGCAUUGCUAACGCUUUAAUAUAAUCCACAGAAACUUCGGCCUGCUUUCCUUUGGCGAAGAAGCCGAAGGUGAUGAGGA
...-...------------------------......((....))..........(((.((....(((((((...((((((...)).))))..)))))))....)).))) ( -21.70)
>consensus
A_U_A_ACUGAAGUCUCUA_AUAC_______UGCAUUGCUAACGCUUCAAUAUAAUCCACAGAAACUUCGGCCUGCUAUCUUUUGGCGAAGAAGCCGAAGGUGACGAGGA
.....................................((....))....................(((((.....(...((((((((......)))))))).).))))). (-16.68 = -18.04 +   1.36)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:12:49 2006