| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 11,765,965 – 11,766,079 |
| Length | 114 |
| Max. P | 0.745850 |
| Location | 11,765,965 – 11,766,079 |
|---|---|
| Length | 114 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 76.43 |
| Mean single sequence MFE | -41.62 |
| Consensus MFE | -17.42 |
| Energy contribution | -18.01 |
| Covariance contribution | 0.59 |
| Combinations/Pair | 1.43 |
| Mean z-score | -2.22 |
| Structure conservation index | 0.42 |
| SVM decision value | 0.46 |
| SVM RNA-class probability | 0.745850 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 11765965 114 + 23771897 CACGC------ACUGGCUGCGACAUCAUCAGCUGGAGGUGCAUGUUGAUCCGCUCCUGCUGGCCUUUUAUAUGCUCCUCCAUUUGCUGCUGUCGCUGCAGCUGCUGUUGGAUUAAUGCCU ...((------((((.(.((((((.((.(((.((((((.((((((.((.((((....)).))...)).)))))).)))))).))).)).)))))).)))).)))................ ( -43.30) >DroVir_CAF1 1773 120 + 1 CACGCACCAAGACGGGCUGACUCAUCAUCAACUGCAGAUGCAUAUUGAUGCGCUCCUGCUGCGCCUUGAUGUGCUCCUCCAUUUGCUGCUGGCGCUGCAGUUGCUGCUGCAGCAGCUCAU .............((((((.((((.((.(((((((((..((((((..(.((((.......)))).)..))))))..........((.....)).))))))))).)).)).)))))))).. ( -47.80) >DroGri_CAF1 1737 120 + 1 CAUUCACCAUAAUGGGUUGUGUCAUCAUCAGCUGAAGUUGCACAUUGAUGCGUUCCUGUUGCGCCUUGAUGUGCUCCUCCAUUUGCUGCUGGCGCUGAAGCUGCUGCUGCAGCAGCGCUU ..((((((.....))...((((((.((.(((.((.((..((((((..(.((((.......)))).)..))))))..)).)).))).)).))))))))))(((((((...))))))).... ( -45.20) >DroWil_CAF1 1357 114 + 1 UAUGG------ACAGGCUGUGACAUCAUCAGUUGAAUAUGCAUAUUGAUUCUCUGCUGCUGCACUUUAAUGUGCUCUUCCAUUUGCUGCUGACGCUGCAAUUGCUGCUGGAUAAGAGAUU ((((.------(..(((((((....)).))))).....).)))).....(((((.((((.((((......)))).....((.((((.((....)).)))).))..)).))...))))).. ( -25.90) >DroMoj_CAF1 1754 120 + 1 CUUGUGCCACGAUGGGCUGGCUCAUCAUCAGCUGAAGGUGCAUAUUGAUGCGCUCCUGUUGAGCCUUGAUAUGCUCCUCCAUUUGCAGUUGGCGCUGUAGCUGCUGUUGCAACAGCGCUU ..........((((((....))))))..((((((.(((.((((((..(.(.((((.....))))))..)))))).))).......))))))(((((((.((.......)).))))))).. ( -47.60) >DroAna_CAF1 1618 114 + 1 CAUGG------ACAGGCUGCGCCAUCAUAAGCUGGAUGUGCAUAUUGAUGCGCUCCUGCUGGCCCUUGAUAUGCUCCUCCAUUUGUUGCUGGCGCUGUAGUUGCUGCUGGAUUAAGGCCU .....------..(((((((((((.((((((.((((.(.((((((..(.(.(((......)))).)..)))))).).)))))))).)).))))))(.((((....)))).)....))))) ( -39.90) >consensus CAUGC______ACGGGCUGCGUCAUCAUCAGCUGAAGGUGCAUAUUGAUGCGCUCCUGCUGCGCCUUGAUAUGCUCCUCCAUUUGCUGCUGGCGCUGCAGCUGCUGCUGCAUCAGCGCUU ...............((.((((((.((.(((.((.....(((((((((.................))))))))).....)).))).)).)))))).))....((((......)))).... (-17.42 = -18.01 + 0.59)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:12:48 2006