Locus 403

Sequence ID 3L_DroMel_CAF1
Location 1,185,269 – 1,185,363
Length 94
Max. P 0.655198
window589

overview

Window 9

Location 1,185,269 – 1,185,363
Length 94
Sequences 5
Columns 109
Reading direction forward
Mean pairwise identity 72.89
Mean single sequence MFE -27.76
Consensus MFE -14.09
Energy contribution -15.33
Covariance contribution 1.24
Combinations/Pair 1.33
Mean z-score -1.72
Structure conservation index 0.51
SVM decision value 0.25
SVM RNA-class probability 0.655198
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 1185269 94 + 23771897
UGGCUCUAAUU-UUUGGCAAUUACAUAAACCCCAUGCCCUCGAGGGCC---------UGUU----CCACAAAUGAUGCGGCUCCAACGAGCCAUGAGCCACA-CUUUGG
((((((.....-....(((.(((.........((.((((....)))).---------))..----.......))))))(((((....)))))..))))))..-...... ( -28.47)
>DroSec_CAF1 929 94 + 1
CGGCUCUAAUU-UUUGGCAAUUACAUAAACCCCAUGCCCUCGGGGGCC---------UGUU----CCACAAAUGAUUCGGCACCAACGAGCCAUGAGCCGCA-CUUUGG
((((((.....-..((((...........((((........))))(((---------...(----(.......))...)))........)))).))))))..-...... ( -26.80)
>DroAna_CAF1 10430 102 + 1
CGGCUCCAAUU-UUUGGCAAUUACAUAAAGUCUAUAGCCCG-GGGCUCUACACUAUAAGCUCCAACCGUAAAUGAUGUGAUGCCAAAAAGGUA-----AUCAUCGUUGC
((((.....((-(((((((.((((((...((.((..(...(-(((((..........))))))..)..)).)).)))))))))))))))(((.-----...))))))). ( -24.70)
>DroSim_CAF1 292 95 + 1
CGGCUCUAAUUUUUUGGCAAUUACAUAAACCCCAUGCCCUCGGGGGCC---------UGUU----CCACAAAUGAUGCGGCACCAACGAGCCAUGAGCCGCA-CUUUGG
((((((........((((...........((((........))))(((---------.((.----.((....))..)))))........)))).))))))..-...... ( -28.10)
>DroYak_CAF1 300 93 + 1
CGGCCCUCAUU-UUUGGCACUUACAUAAACCCCAUCGCCUGGGGGCUCCACAAG---UGAU----CCACAAAUGAUGCGGCUCCAA-------UGGGCCUCA-CUUUGG
.((((((((((-(.((((((((.......(((((.....))))).......)))---))..----))).))))))...(....)..-------.)))))...-...... ( -30.74)
>consensus
CGGCUCUAAUU_UUUGGCAAUUACAUAAACCCCAUGCCCUCGGGGGCC_________UGUU____CCACAAAUGAUGCGGCACCAACGAGCCAUGAGCCGCA_CUUUGG
.(((((........(((.....(((..........((((....))))..........))).....)))..........(((........)))..))))).......... (-14.09 = -15.33 +   1.24)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:40:59 2006