| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 11,756,839 – 11,756,953 |
| Length | 114 |
| Max. P | 0.855779 |
| Location | 11,756,839 – 11,756,953 |
|---|---|
| Length | 114 |
| Sequences | 6 |
| Columns | 117 |
| Reading direction | forward |
| Mean pairwise identity | 78.14 |
| Mean single sequence MFE | -33.48 |
| Consensus MFE | -24.21 |
| Energy contribution | -22.52 |
| Covariance contribution | -1.69 |
| Combinations/Pair | 1.38 |
| Mean z-score | -1.48 |
| Structure conservation index | 0.72 |
| SVM decision value | 0.81 |
| SVM RNA-class probability | 0.855779 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 11756839 114 + 23771897 ---CUAUUUUCAACCAUUUGUAUAUGUGCUGUACUAACUGUGGUGCAGGUUUUGGCACCUCCUGGUGCUCAGGAAACUCAAUGCGUCCUCCAUACGGAGGUACUUCAAUGCUCAAAA ---...........((((.((((.....((((((((....)))))))).((((((((((....))))).)))))......))))(((((((....))))).))...))))....... ( -32.70) >DroGri_CAF1 68853 114 + 1 AAAUCAAUCGAAAUAAUUGGUGGC---AGAGAACUUACUGCGGUGCAGGCUUGGGCGUCUCCUGAUGCUCGGGAAACUCAAUGCGACCGCCAUAUGGCGGUACUUCAAUGCUCAGCA .................((.((((---(..(((.....((((.((.((.((((((((((....))))))))))...)))).))))((((((....))))))..)))..))).)).)) ( -39.10) >DroSec_CAF1 69131 114 + 1 ---CUAUAUUUAACCAUUUAUGUAUAUGGUGUACUAACUGUGGUGCAGGUUUUGGCACCUCCUGGUGCUCGGGAAACUCAAUGCGUCCUCCAUACGGAGGUACCUCAAUGCUCAAAA ---.........(((((........)))))........((.((((((((((((((((((....))))))...))))))...)))..(((((....))))).))).)).......... ( -31.90) >DroEre_CAF1 65173 114 + 1 ---CUAUUAUAAACAAUUUGUAUAUAUGCUAUACUAACUGCGGUGCAGGUUUUGGCACCUCCUGGUGCUCAGGAAACUCUAUGCGGCCUCCAUACGGAGGUACCUCAAUGCUCAGAA ---................(((((.....)))))...(((.((((((((((((((((((....))))))...))))))...))).((((((....))))))........)))))).. ( -31.50) >DroYak_CAF1 66497 114 + 1 ---CUAUUAUUAAAAAUUGUAAUAUAUGCUAUACUAACUGUGGUGCAGGUUUUGGCGCCUCCUGGUGCUCGGGAAACUCUAUGCGGCCUCCAUACGGAGGUACCUCAAUGCUCAGAA ---.((((((........))))))..............((.((((((((((((((((((....))))))...))))))...))).((((((....))))))))).)).......... ( -30.90) >DroAna_CAF1 59296 114 + 1 ---ACGUUCCUAAUCUCGCUUAGUUUGGGAAUACUUACUGUGGUGCUGGCUUUGGUAUCUCCUGAUGCUCGGGGAACUCAAUGCGACCCCCAUAGGGCGGCACUUCAAUGCUCAGAA ---..((((((((.((.....)).))))))))......((.(((((((.(((.((((((....)))))).((((...((.....)).))))..))).))))))).)).......... ( -34.80) >consensus ___CUAUUAUUAACAAUUUGUAUAUAUGCUAUACUAACUGUGGUGCAGGUUUUGGCACCUCCUGGUGCUCGGGAAACUCAAUGCGACCUCCAUACGGAGGUACCUCAAUGCUCAGAA ......................................((.(((((..((...((((((....)))))).((....))....))...((((....))))))))).)).......... (-24.21 = -22.52 + -1.69)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:12:47 2006