| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 11,749,890 – 11,749,988 |
| Length | 98 |
| Max. P | 0.900979 |
| Location | 11,749,890 – 11,749,988 |
|---|---|
| Length | 98 |
| Sequences | 6 |
| Columns | 114 |
| Reading direction | reverse |
| Mean pairwise identity | 79.41 |
| Mean single sequence MFE | -25.62 |
| Consensus MFE | -18.82 |
| Energy contribution | -19.10 |
| Covariance contribution | 0.28 |
| Combinations/Pair | 1.19 |
| Mean z-score | -1.84 |
| Structure conservation index | 0.73 |
| SVM decision value | 1.02 |
| SVM RNA-class probability | 0.900979 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 11749890 98 - 23771897 AAACCGGAUCCCAAAAAGGAGACCAAACGCAAGACCAAAGUGGUGCGCAAGACCUGUGUGCCCAGUUUCAUGGAAACUGUAAGCAG--A-----GA----CUGAUU-----AUC .....((.((((.....)).))))...(....)........((..((((.....))))..))(((((((..(....)((....)))--)-----))----)))...-----... ( -25.40) >DroVir_CAF1 72714 105 - 1 AAACCGGAUCCAACCAAAGUGACCAAACGUAAAACCAAAGUGGUGCGCAAGACCUGCGUGCCCAGCUUCAUGGAGACGGUAAGGUUACA-----GC----CGCAUUUCAAAUUU ..((((..((((......((......)).........((((((..((((.....))))..))..))))..))))..))))..(((....-----))----)............. ( -29.20) >DroEre_CAF1 58035 100 - 1 AAACCGGAUCCCAAAAAGGAGACCAAACGCAAGACCAAAGUGGUGCGCAAGACCUGUGUGCCCAGUUUCAUGGAAACGGUAAGAAG--A-----AGAA--CUCAUC-----UUC ..((((..(((.......(((((....(....)......(.((..((((.....))))..))).)))))..)))..))))..((((--(-----.(..--..).))-----))) ( -28.20) >DroWil_CAF1 75841 103 - 1 AAACCGGAUCCCAAAAAAGAAACCAAACGCAAGACCAAAGUUGUGCGCAAAACUUGUGUACCCAGUUUUAUGGAAACGGUAAGCAU--AGUAGAGA----UAACUU-----CUC ..((((..(((................(....).........(((((((.....)))))))..........)))..))))......--....((((----.....)-----))) ( -21.20) >DroYak_CAF1 59374 100 - 1 AAACCGGAUCCCAAAAAGGAGACCAAACGCAAGACCAAAGUGGUGCGCAAGACCUGUGUGCCCAGUUUCAUGGAAACGGUAAACAA--A-----AGUA--CUUAUU-----AUC ..((((..(((.......(((((....(....)......(.((..((((.....))))..))).)))))..)))..))))......--.-----....--......-----... ( -24.80) >DroAna_CAF1 52537 102 - 1 AAACCGGAUCCCAAAAAGGAGACCAAACGCAAGACCAAAGUAGUGCGCAAGACCUGCGUGCCCAGUUUUAUGGAAACGGUUAGUAG--C-----UCAACAAUAAUU-----GAG .(((((..(((.(((..((........(....).........(..((((.....))))..)))..)))...)))..))))).....--(-----((((......))-----))) ( -24.90) >consensus AAACCGGAUCCCAAAAAGGAGACCAAACGCAAGACCAAAGUGGUGCGCAAGACCUGUGUGCCCAGUUUCAUGGAAACGGUAAGCAG__A_____GA____CUAAUU_____AUC ..((((..(((.......(((((....(....)........((((((((.....))))))))..)))))..)))..)))).................................. (-18.82 = -19.10 + 0.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:12:46 2006