Locus 4027

Sequence ID 3L_DroMel_CAF1
Location 11,746,956 – 11,747,070
Length 114
Max. P 0.540087
window6274

overview

Window 4

Location 11,746,956 – 11,747,070
Length 114
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 82.94
Mean single sequence MFE -32.60
Consensus MFE -19.56
Energy contribution -19.90
Covariance contribution 0.33
Combinations/Pair 1.00
Mean z-score -2.23
Structure conservation index 0.60
SVM decision value 0.01
SVM RNA-class probability 0.540087
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 11746956 114 + 23771897
UAUCGUAACUUGUGUGGCUUCGAACUUACCUAGUUGAG----GAAA-ACUCCCAUGU-CGGAUUUUGUUACCUCUGGUAUUCGAGCCAAUAAGUUCGGCCACGAAUUCGCAUUUUAUCUU
....((((..(((((((((.((((..((((.....(((----(.((-(.(((.....-.))).)))....)))).)))))))))))))...((((((....))))))))))..))))... ( -30.90)
>DroVir_CAF1 68970 115 + 1
UAUCGUAACUUGUGUGGCUU-GAAUGUACCUGGUUGAG----GAACGAAUUCAACGUUUGGAUUUUGUUGCCUUUGGUAUUCGAGCCAAUAAGUUCGGCCACCGGUUCACAUUUUAUCUU
..(((.(((((((.((((((-((..(((((.....(((----(((((((.((........)).)))))).)))).)))))))))))))))))))))))...................... ( -34.50)
>DroGri_CAF1 57886 100 + 1
UAUCGUAACUUGUGUGGCUUCGAAUGUACCUGGCUAAG----GAAA---------GU-UGGAUUU------CCUAGGUAUUCGAGCCAAUAAGUUCGGCAGCGGGUUCGCAUUUUAUCUU
..(((.(((((((.(((((.(((..((((((.....((----((((---------..-....)))------)))))))))))))))))))))))))))..(((....))).......... ( -32.80)
>DroMoj_CAF1 73094 119 + 1
UAUCGUAACUUGUGUGGCUUCGAAUGUACCUCGUCGAGCGAAAAGCGAAUUCAUUGU-UGGAUUUUGUUGCUCUUGGUAUUCGAGCCAAUAAGUUCGGCAACCAGUUCGCAUUUUAUCUU
..(((.(((((((.(((((.(((..(((((.....((((((.....(((((((....-)))))))..))))))..)))))))))))))))))))))))...................... ( -34.40)
>DroAna_CAF1 49719 112 + 1
UAUCGUAACUUGUGUGGCUUCGAAUGUACCUAGUUGAG----GAAA-AAUC--AGUU-UGGAUUUUGUUACCUCUGGUAUUCGAGCCAAUAAGUUCGGCCACGAAUUCGCAUUUUAUCUU
....((((..(((((((((.(((..(((((.....(((----(.((-((((--....-..))))))....)))).)))))))))))))...((((((....))))))))))..))))... ( -32.30)
>DroPer_CAF1 57537 113 + 1
UAUCGUAACUUGUGUGGCUUCGAAUGUACCUAGUUGAG----GAAA-ACUCCGA-AA-UGGAUUUUGUUACCUCUGGUAUUCGAGCCAAUAAGUUCGGCCACGAAAUCGCAUUUUAUCUU
..(((.(((((((.(((((.(((..(((((.....(((----(.((-(.(((..-..-.))).)))....)))).)))))))))))))))))))))))...................... ( -30.70)
>consensus
UAUCGUAACUUGUGUGGCUUCGAAUGUACCUAGUUGAG____GAAA_AAUCC_A_GU_UGGAUUUUGUUACCUCUGGUAUUCGAGCCAAUAAGUUCGGCCACGAAUUCGCAUUUUAUCUU
..(((.(((((((.(((((.(((..(((((.............................................)))))))))))))))))))))))...................... (-19.56 = -19.90 +   0.33)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:12:45 2006