| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 11,740,946 – 11,741,059 |
| Length | 113 |
| Max. P | 0.658392 |
| Location | 11,740,946 – 11,741,059 |
|---|---|
| Length | 113 |
| Sequences | 6 |
| Columns | 114 |
| Reading direction | forward |
| Mean pairwise identity | 79.20 |
| Mean single sequence MFE | -26.70 |
| Consensus MFE | -15.32 |
| Energy contribution | -15.93 |
| Covariance contribution | 0.61 |
| Combinations/Pair | 1.05 |
| Mean z-score | -1.80 |
| Structure conservation index | 0.57 |
| SVM decision value | 0.26 |
| SVM RNA-class probability | 0.658392 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 11740946 113 + 23771897 AUCAGAAACAUCAGAGGCAGCAGAAGCACGCGUUUUAUCUCGUAAUUAAAUUUAAAUGGGAUAACUUUGUGGCCGG-GAGUCACUUCCGUAGCACAAAGAAAUUAGCGACUGUC ...............((((((....)).(((...(((((((((............)))))))))(((((((..(((-(((...))))))...)))))))......)))..)))) ( -28.60) >DroSec_CAF1 53766 113 + 1 AUCAGAAACAUCAGAGACAGCAGAAGCACGCGUUUUAUCUCGUAAUUAAAUUUAAAUGGGAUAACUUUGUGGCCGG-GAGUCACUUCCGUAGCACAAAGAAAUUAGCGACUGUC ...............((((((....)).(((...(((((((((............)))))))))(((((((..(((-(((...))))))...)))))))......)))..)))) ( -29.20) >DroEre_CAF1 50659 109 + 1 ----GAAACAUCAGAAAGAGCAGAAACACGCGUUUUAUCUCGUAAUUAAAUUUAAAUGGGAUAACUUUGUGGCCGG-GAGUCACUUCCGUACCACAAAGAAAUUAGCGAGUGUC ----.....................((((.(((((((((((((............)))))))))((((((((.(((-(((...))))))..)))))))).....)))).)))). ( -30.90) >DroYak_CAF1 51215 113 + 1 AUCAGAAACAUCAGAAAGAGCAGAAACACGCGUUUUAUCUCGUAAUUAAAUUUAAAUGGGAUAACUUUGUGGCCGG-GAGUCACUUCCGUAGCACAAAGAAAUUAGCGAGUGUC .........................((((.(((((((((((((............)))))))))(((((((..(((-(((...))))))...))))))).....)))).)))). ( -27.80) >DroAna_CAF1 45108 90 + 1 AUCAGGAA------------------CAUGCGU-UUAUCUCGUAAUUAAAUUUAAAUGGGAUAACUUUGUGGCCAGAGCCUCGUUUCCGCGCCACAAAGAAAUUAGCGU----- ........------------------.((((..-(((((((((............)))))))))((((((((((.(((......))).).)))))))))......))))----- ( -24.90) >DroPer_CAF1 48099 90 + 1 AUCAGAAA------------------CAUGCGU-UUAUCUCGUAAUUAAAUUUAAAUGGGAUAACUUUGUACCCUC-UCUGCGUUUCCGCCGCAGAAAGAAAUUAGCG----UC ........------------------.((((..-(((((((((............))))))))).........((.-((((((.......)))))).))......)))----). ( -18.80) >consensus AUCAGAAACAUCAGA_A_AGCAGAA_CACGCGUUUUAUCUCGUAAUUAAAUUUAAAUGGGAUAACUUUGUGGCCGG_GAGUCACUUCCGUAGCACAAAGAAAUUAGCGA_UGUC ............................(((...(((((((((............)))))))))(((((((..(((..........)))...)))))))......)))...... (-15.32 = -15.93 + 0.61)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:12:42 2006