Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 11,734,116 – 11,734,207 |
Length | 91 |
Max. P | 0.947373 |
Location | 11,734,116 – 11,734,207 |
---|---|
Length | 91 |
Sequences | 6 |
Columns | 99 |
Reading direction | reverse |
Mean pairwise identity | 75.09 |
Mean single sequence MFE | -24.06 |
Consensus MFE | -10.02 |
Energy contribution | -12.40 |
Covariance contribution | 2.38 |
Combinations/Pair | 1.10 |
Mean z-score | -2.47 |
Structure conservation index | 0.42 |
SVM decision value | 1.37 |
SVM RNA-class probability | 0.947373 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 11734116 91 - 23771897 GAAAGU--------AUCAAAGCAGUGGAAAAUUAAUUUCCACGACCAUUAUCCAAUAUCAUUCGUUGGCCGCAAGCUGUUGCCAAUUGCUUUGGCAAUU ......--------.(((((((((((((((.....))))))).....................((((((.((.....)).))))))))))))))..... ( -26.20) >DroSec_CAF1 47003 91 - 1 GAAAGU--------GUCAAAGCAGUUGAAAAUUAAUUUCCCCGACCAUUAUCCAAUAUCAUCCGUUGGCCGCAAGCUGUUGCCAAUUGCUUUGGCAAUU .....(--------(((((((((((((.............(((((..................)))))..((((....))))))))))))))))))... ( -24.67) >DroSim_CAF1 42066 91 - 1 UAAAGU--------GUCAAAGCAGUGGAAAAUUAAUUUCCCCAACCAUUAUCCAAUAUCAUUCGUUGGCCGCAAGCUGUUGCCAAUUGCUUUGGCAAUU .....(--------((((((((((.(((((.....))))).).....................((((((.((.....)).))))))))))))))))... ( -26.20) >DroEre_CAF1 43236 99 - 1 GAAAGUACAGAAUUGUCAUAGCAGUGGAGAAUUAAUUUCACCGACCAUUAUCCAUUAUCAUCCGUUGGCCGCAAGCUGUUGCCAAAUGCUUUGGCAAUU ..........((((((((.((((.(((.(((.....))).))).....................(((((.((.....)).))))).)))).)))))))) ( -24.50) >DroYak_CAF1 44138 99 - 1 GAAAAUACAGAAUUGCCAUAGCAGUGGGAAAUUAAUUUCACUGACCAUUAUCCAUUAUCGCCCGUUGGCCGCAAGCUGUUGCCAAUUGCUUUGGCAAUU ..........((((((((.(((((((..(......)..)))).....................((((((.((.....)).)))))).))).)))))))) ( -28.70) >DroAna_CAF1 38436 71 - 1 GGCAGG--------AUUGCAGGACUC-----UAAAAUCCUCUAACGAUUAUCCAUUAUUUUUC----ACUGCAAGCUGUUGCCAG-----------AUU (((((.--------.((((((((...-----........((....))..............))----.))))))....)))))..-----------... ( -14.11) >consensus GAAAGU________GUCAAAGCAGUGGAAAAUUAAUUUCCCCGACCAUUAUCCAAUAUCAUCCGUUGGCCGCAAGCUGUUGCCAAUUGCUUUGGCAAUU ..............((((.((((((((.................)))))..............((((((.((.....)).)))))).))).)))).... (-10.02 = -12.40 + 2.38)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:12:39 2006