Locus 4017

Sequence ID 3L_DroMel_CAF1
Location 11,719,908 – 11,720,020
Length 112
Max. P 0.536652
window6257

overview

Window 7

Location 11,719,908 – 11,720,020
Length 112
Sequences 5
Columns 116
Reading direction reverse
Mean pairwise identity 82.94
Mean single sequence MFE -24.82
Consensus MFE -18.72
Energy contribution -19.56
Covariance contribution 0.84
Combinations/Pair 1.11
Mean z-score -1.52
Structure conservation index 0.75
SVM decision value 0.01
SVM RNA-class probability 0.536652
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 11719908 112 - 23771897
GUGUAACGAAAUUGCCAAUUACAUAUAAAGCCAAAGAAACUGUCUACCUAGUCAGAGAGUUAGGAUCCGUUUUA----UUUGGCAGAGAUGCACAGUAAGAAAUUCAAAGUUAUAU
(((((.(....(((((((......(((((((......((((.(((........))).)))).(....)))))))----)))))))).).)))))...................... ( -20.80)
>DroSec_CAF1 32807 112 - 1
GUGUAACGAAAUUGCCAAUUACAUAUAAAGCCAAAGAAACUGUCUACCUAGUCAGGGAGCUAAGAUCCGUUUUA----UUUGGCAGCGAUGCACUGAAAGAAAUUCAAAGUUAUAU
(((((.((....((((((......(((((((........(((.((....)).)))(((.......)))))))))----))))))).)).)))))((((.....))))......... ( -24.40)
>DroEre_CAF1 29088 112 - 1
GUGUAACGAAAUUGCCAAUUACAUAUAAAGCAAAAGGAACUGUCUACCUAGUCGGGGAGUUAGGAUCCGUUUUG----CUUGGCAGCGAUGCACAGGAAGAAAUCCAAAGCUAGAU
(((((.((....(((((...........((((((((((.(((.((.(((.....))))).)))..))).)))))----))))))).)).))))).(((.....))).......... ( -30.70)
>DroYak_CAF1 29556 105 - 1
GUGUAACGAAAUUGCCAAUUACAUAUAAAGCAAAAGGAACUGUCUACCUAGUCAGGGAGU-AGGAUCCGUUUUA----UUUGGCAGCGAUGCACAGAAAGAAAUUUAAA------U
(((((.((....((((((......(((((((........(((.((....)).)))(((..-....)))))))))----))))))).)).)))))...............------. ( -25.80)
>DroAna_CAF1 25459 110 - 1
GUGUAACAAAAUUGCCAAUUACAUAUAAAGCAUGAAAAACUGUCUACCUAGUCAGGCAGUAGGGAUCCUUCUUGUAUUUUUGGCGUAACUGCACAGAAAAAAAAAUGA------AU
(((((.......((((((.(((................(((((((........))))))).((((....)))))))...))))))....)))))..............------.. ( -22.40)
>consensus
GUGUAACGAAAUUGCCAAUUACAUAUAAAGCAAAAGAAACUGUCUACCUAGUCAGGGAGUUAGGAUCCGUUUUA____UUUGGCAGCGAUGCACAGAAAGAAAUUCAAAG_UA_AU
(((((.((....((((((.......((((((........(((.((....)).)))(((.......))))))))).....)))))).)).)))))...................... (-18.72 = -19.56 +   0.84)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:12:29 2006