| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 11,719,271 – 11,719,374 |
| Length | 103 |
| Max. P | 0.794931 |
| Location | 11,719,271 – 11,719,374 |
|---|---|
| Length | 103 |
| Sequences | 5 |
| Columns | 112 |
| Reading direction | reverse |
| Mean pairwise identity | 63.18 |
| Mean single sequence MFE | -23.72 |
| Consensus MFE | -11.70 |
| Energy contribution | -11.70 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.67 |
| Structure conservation index | 0.49 |
| SVM decision value | 0.60 |
| SVM RNA-class probability | 0.794931 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 11719271 103 - 23771897 GCAGGAAAUUGCCUGAAAUCAGGCGCACGUAAGCUUGGGGGGUGCCCCACUUAUACUUAGUCCCAAACCUACCUACCCCCCCUUGCUCCACACACAC----AGUAAC----- ...(((....(((((....)))))....(((((...((((((((.............................))))))))))))))))........----......----- ( -29.55) >DroVir_CAF1 35898 85 - 1 GCAGGAAAUUGCCUGAAAUCAGGCGCACGUAAGCCCCGU-CACGCCCCUC--CAAAC------CGC----ACACACGCACA--AG---CGCACACAC----ACUCUC----- ((.(((....(((((....)))))((......)).....-........))--)....------.((----......))...--..---.))......----......----- ( -17.10) >DroGri_CAF1 28345 90 - 1 GCAGGAAAUUGCCUGAAAUCAGGCGCACGUAAGCC-CGU-CACGUCCCUU--CCCCCGUGCUC--C----ACCCAACC--A--AC---CGCACACAC-----UACACGGUGU ((.((.....(((((....)))))(((((......-...-..........--....)))))..--.----........--.--.)---)))..((((-----(....))))) ( -21.40) >DroSec_CAF1 32175 103 - 1 GCAGGAAAUUGCCUGAAAUCAGGCGCACGUAAGCUUGGGGGGUGUCCCACUUAAACUCAGUCCCAAACCA----ACCCCCCCUUGCUCCACACACACACAGAGUAAC----- ...(((....(((((....)))))....(((((...(((((((...........................----)))))))))))))))..................----- ( -29.83) >DroYak_CAF1 28489 88 - 1 GCAGGAAAUUGCCUGAAAUCAGGCGCACGUAAGCUCGGGGGGUGCUCCACUUAAACCCAGACCC----------ACACACC-------CACACAC--AUACACUUAC----- ...((.....(((((....)))))((......))..(((((((...........))))...)))----------......)-------)......--..........----- ( -20.70) >consensus GCAGGAAAUUGCCUGAAAUCAGGCGCACGUAAGCUCGGGGGGUGCCCCACUUAAACCCAGUCCC_A____AC__ACCCACC__AG___CACACACAC____ACUAAC_____ ...((.....(((((....)))))((......))............))................................................................ (-11.70 = -11.70 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:12:28 2006