| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 11,717,110 – 11,717,210 |
| Length | 100 |
| Max. P | 0.927391 |
| Location | 11,717,110 – 11,717,210 |
|---|---|
| Length | 100 |
| Sequences | 3 |
| Columns | 116 |
| Reading direction | reverse |
| Mean pairwise identity | 71.86 |
| Mean single sequence MFE | -26.76 |
| Consensus MFE | -16.60 |
| Energy contribution | -17.60 |
| Covariance contribution | 1.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.65 |
| Structure conservation index | 0.62 |
| SVM decision value | 1.18 |
| SVM RNA-class probability | 0.927391 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 11717110 100 - 23771897 ---------CGCUGAGAACUAUUUAAAGUUCUUUU----UUU---CUCAGUGUACCGAUGCACCAUCAUCAUAUUGAUUCGCCUGGAAAUGGCUAAUCACAUGAGUGAGUCACCCA ---------(((((((((.................----.))---)))))))....(((.(((.....((((..(((((.(((.......))).))))).))))))).)))..... ( -24.17) >DroEre_CAF1 26300 99 - 1 CAUAGUUCUUGUA-----------UAAGUUCGUGUGCACUUU---CUCAGUGUAUCGAUGCACUA---GCUUAUGGAUUCGCCUGGAAAUGGCUAAUCACAUGAGUGAGUCACCCA .............-----------.....(((.(((((((..---...))))))))))((.(((.---(((((((((((.(((.......))).)))).))))))).))))).... ( -27.90) >DroYak_CAF1 26327 105 - 1 UAAAGUUCUUGUA-----------UAAAUGUGUGUGAACUUUUCGCUCUGUGUAUCGAUGCACCAGCAGCUUAUGGAUUCGCCUGGAAAUGGCUAAUCACAUGAGUGAGUCACCCA .............-----------......((.((((.(((...(((..(((((....))))).))).(((((((((((.(((.......))).)))).)))))))))))))).)) ( -28.20) >consensus _A_AGUUCUUGUA___________UAAGUUCGUGUG_ACUUU___CUCAGUGUAUCGAUGCACCA_CAGCUUAUGGAUUCGCCUGGAAAUGGCUAAUCACAUGAGUGAGUCACCCA .............................................(((.(((((....))))).....(((((((((((.(((.......))).)))).))))))))))....... (-16.60 = -17.60 + 1.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:12:27 2006