Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 11,716,386 – 11,716,485 |
Length | 99 |
Max. P | 0.541466 |
Location | 11,716,386 – 11,716,485 |
---|---|
Length | 99 |
Sequences | 4 |
Columns | 101 |
Reading direction | reverse |
Mean pairwise identity | 87.58 |
Mean single sequence MFE | -23.90 |
Consensus MFE | -14.86 |
Energy contribution | -14.42 |
Covariance contribution | -0.44 |
Combinations/Pair | 1.20 |
Mean z-score | -2.16 |
Structure conservation index | 0.62 |
SVM decision value | 0.02 |
SVM RNA-class probability | 0.541466 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 11716386 99 - 23771897 AUCAUUUGCUAGCGUGUAGGUGUGUGUAUAAAAACAUGAAUAGCCUAAUAUACAUGCACUGCGCUAAAA--AAAAGUUGUUGCCCAAAUGUGCAGAAAAAA ....(((((((((((...((((((((((((..................))))))))))))))))))...--.....(((.....)))....)))))..... ( -22.57) >DroSim_CAF1 25376 101 - 1 AUCAUUUGCUGGCGCGUAGGUGUGUGUAUAAAAACAUGAAUAGCCUAAUAUACAUGCACUGCGCUAAAAAAAAAAGUUGUUGCCGAAAUGUGCAGAAAAAA ....(((((((((((...((((((((((((..................)))))))))))))))))).........((....))........)))))..... ( -23.47) >DroEre_CAF1 25598 95 - 1 AUCAUUUGCUGGC--GUAGGUGUGUAUAUGGAAACAUGAAUAGCCUAAUAUACGUGCACUGCGCUGAA----AAAGUGCCUGCCCAAAUGUGCCGAAAAAA ....(((..((((--((((((.(((.((((....)))).))))))))......(.(((..(((((...----..))))).))).).....)))))..))). ( -26.40) >DroYak_CAF1 25621 95 - 1 AUCAUUUGCUGGC--GUAGGUGGGUAUGUAAAAACAUGAAUAGCCUAAUAUACAUGCACUGCGCUAAA----AAAGUUGUAUCGCAAAUGUGCUGAAAAAA ..(((((((((((--((((....(((((((....................))))))).))))))))..----...(......))))))))........... ( -23.15) >consensus AUCAUUUGCUGGC__GUAGGUGUGUAUAUAAAAACAUGAAUAGCCUAAUAUACAUGCACUGCGCUAAA____AAAGUUGUUGCCCAAAUGUGCAGAAAAAA ..((((((.((((..((((((((((((((..................)))))))))).)))))))).........(......).))))))........... (-14.86 = -14.42 + -0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:12:26 2006